3300003741: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_12L

Overview

Basic Information

• IMG/M Taxon OID: 3300003741
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0109405 | Ga0062509
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS904_55_12L
• Sequencing Status: Permanent Draft
• Sequencing Center: Marine Biological Laboratory
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1764119
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Marker 33 diffuse flow vent, Axial Seamount
• Coordinates
  • Lat. (^o): 45.9332
  • Long. (^o): -129.982268
  • Alt. (m): N/A
  • Depth (m): 1516

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046373	Metagenome / Metatranscriptome	151	Y
F051069	Metagenome / Metatranscriptome	144	N
F054846	Metagenome / Metatranscriptome	139	N
F091607	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0062509_10851	Not Available	676
Ga0062509_11152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	583
Ga0062509_11362	Not Available	1043
Ga0062509_11968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila	524

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0062509_10851	Ga0062509_108512	F091607	MSLETQISELNATIKTLNENILLLLGSKEQHSKVECSPVEPANLGQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTGDLADNQINLCYSMIA
Ga0062509_11152	Ga0062509_111521	F051069	IDALITSSREELENLLKIPLITQVWAQTYDSFIEQVYAPFIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPSLQFDGFKITFTYTVSAIDAALKTAIMELTSYRFYNRGNLETAKIPASVLSMVGHLRVFSV*
Ga0062509_11362	Ga0062509_113621	F054846	MPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
Ga0062509_11968	Ga0062509_119682	F046373	SMINSFIANTHCFVVAHNNVDDYRICELGEGNELSSLLPHFEQFDTYELALARVPVEFRPDDEQL*