3300003732: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_80 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003732
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099541 | Gp0061257 | Ga0006241
• Sample Name: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome C0912_C43A7_80 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8016886
• Sequencing Scaffolds: 10
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → intertidal zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Monterey Bay, California, USA
• Coordinates
  • Lat. (^o): 36.46
  • Long. (^o): -122.78
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000021	Metagenome / Metatranscriptome	6082	Y
F000048	Metagenome / Metatranscriptome	3365	Y
F000119	Metatranscriptome	2105	Y
F007099	Metatranscriptome	357	N
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F019484	Metagenome / Metatranscriptome	229	Y
F025436	Metatranscriptome	201	Y
F060481	Metatranscriptome	132	N
F073414	Metagenome / Metatranscriptome	120	N
F089615	Metatranscriptome	108	Y
F097458	Metagenome / Metatranscriptome	104	Y
F098669	Metagenome / Metatranscriptome	103	N
F098747	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006241_100033	Not Available	510
Ga0006241_102116	Not Available	728
Ga0006241_102271	Not Available	1177
Ga0006241_103813	Not Available	651
Ga0006241_104484	Not Available	1763
Ga0006241_104545	Not Available	1053
Ga0006241_104691	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	540
Ga0006241_104744	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	972
Ga0006241_105090	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda	578
Ga0006241_105622	Not Available	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006241_100033	Ga0006241_1000331	F098669	METATRGRKQKWRLKEAEGLGRKQRIEEAERRELHESDQGLDSGHGLNPGRKVRRIDQTMEGSPEIVPAKIRKKPC
Ga0006241_102116	Ga0006241_1021161	F015413	MESTELEKQVNDLLNTKFEQPEFEQLLPKGLLGKDMLIGSAGTALAVQMGNIVGKFLPIGQLPSGTSSILAGVLMQKFLGKNGNLKKLSEGVIQGGIATALTPFVSGLIPAQFQQVEKQVETATETINPTMQGVMW*
Ga0006241_102271	Ga0006241_1022712	F097458	LHRSYKLPPIFLSLTFAALLPRRDIYALAFTPKLDLKHIISIDSWYKLLGSPILFDTYTLMVRRQTEPIVNCRGT*
Ga0006241_103813	Ga0006241_1038131	F015413	MLDLESTDLEKQVNDLLNTKFEQPDFEQILPKGILGKDMLIGSAGTALAVQMGNIVGKFLPLGQLPSGTSSILAGILLQKFLGKNGNLKKLSEGIIQGGIATAMTPFVSGLIPAQFQQVEKQVETATEPINPTMQGVMW*
Ga0006241_104484	Ga0006241_1044842	F019484	NTMYSFFYFLTILGGSLKKIAKKITTNVPISKKVYTNASII*
Ga0006241_104545	Ga0006241_1045451	F025436	SYLLFYSACSFHLHFLVVLSTMFTGSARMLVTSGSRLASTASPWGSAAWRYDKTAFLKFCQAASLDTPGASKREWNGFLALSFADVDGDNDGKINAAEFDVLCESVAKLPRRFGLAPTWEIEYGGDVAKRTAARQKMFDAIDGMHGPTRGWIGCAQFIHWATSHVASKVSGSKITGVDFNHVSDYSKQDFLKAVDNAVHDPLSADHHNFYEFLLTIFVEEDHLCKGVVNLEGFTRLINRAAYVPRHFGLAPPSADAARVAELYAAMEDSRLGGVTFRKFLQWTKEHTKGKIEAHKA*
Ga0006241_104691	Ga0006241_1046911	F098747	FQVICCPASPTTGMHGIELRGRERRTFRLSAPRQPFSPVNGSKLSDSPQLSLPLGTGCSCRPFAHLQRPPLSRKPFQGQSSWPVTSHPNQPVPLPVRPFCSATGPGSPRFPAASTLLARCSVSGLPDLRLLQPPLPFGTFASLWIKAFNWTRRSSARLPNPPDTSRSPQPLSITSVPAA
Ga0006241_104744	Ga0006241_1047443	F012639	MSANNSGIVLTCSAAFAAAAPVATVISATMQTSPTVTAVTELQVPLTENWIATDVYILAAAGAGTPTVINPVVSMDKNRGRQLVQTPPLSSMLITNNTRPRFSPQPIGFEGGSIIRMFATSTVLNGGAISTA
Ga0006241_105090	Ga0006241_1050901	F060481	PSHTMKVLLLSTLVALVAADSCSDCTAVVSVISARMSSEESINQQIDMLVAGLCPESDDPAGCEAGLPDFWRAIAAILWPGYWDPAAEWMCGPTCAAPEDTTMTCEDCTTGIQGAIDQLLAEETINTIAGLFSDPEGEFCSGAEDVEFCSSAADFVIRNGLPLLGSAADASQFPPVCNAAVEGTCPARRFAK
Ga0006241_105553	Ga0006241_1055531	F089615	GLQVQLLAASLQPVNTGLVSPSGKINVDGSPHASTKVGWARVDVTILLVQAEVLAGLLLDTFLDTLDTLGQPGEDLLDVSSLLHGDDTELILLVNPDEEGLILVVEDATSLGPVALHASNLEVPVSRHKQEMVVNKLLANPLVHSSQGVVLSSKVGREALDGIDHQLLNSNTLVPGDTGRQTESINRATNTDSARVNRDIRVNIALDLAGVHIRGVLSRGENAVVLLDQGVEHRGEVLVGVPVTSIDTTVLVVKLNRNSDGLVKSESRGLGLDVLQLVPLVPGNVLCHEGVPGLDDGEVAGGDIVARAGADRLG
Ga0006241_105622	Ga0006241_1056221	F007099	GQGMNSMGTLLGLVVALGLLHSTTAFDCKRYTVREIEITGNTTGNMSEIFRTTKDTQRCSAVYKLDNTTCSSMQLTCGRWYLPNKDPVQCRRGDKFLIKVDDSKPRVFCEHDKPTIYYPAFSFTRMKVWYAANVDLKFPNSGATCKVKCTAVV*
Ga0006241_106004	Ga0006241_1060041	F000021	VIDKNGTPKTGGNGIKQLRENIAESKLSYEIMDDAAQAFLKVKIMDNIHKYYYLILFTAYMREAADKARNSVSDEQKAELTLTSGKCAIPGNQLKLARTFVDFMEENSALRTLIDTGKGDLQWERDIPPASLSNLEGLAKGDFQANLGKIVHDIYQTAHTMFADMPQGDHKKRAKYRFASKTLMRILPPAQKAEVEGLIEKKAITLDLYEILGKCTWKPV*
Ga0006241_106560	Ga0006241_1065601	F000048	SNDVKFWAEYRTGIKEYSPWLAGAEKATAEGLAKPSDLNEVKTLHEKVSTFDKTCLTYAKVLDAANGAAQKMTTHAEADAEVAALKERYNKVKAVSDEWVKKVDVLLKEWTLLDNTVTDLNSWVAKDKSSEGENQFSLEKMESTLGELKNIFKEKEKLVENL*
Ga0006241_106893	Ga0006241_1068931	F000119	MKPAILLAFALASASAAPEPRFSCSECVEEMRGLGHLVKMGAVTIHDYIRDTYCPTLEHHQADCEKSLSKYYVGMLFAIVEHYFMDGAVHICQTGGACDAAKEYTCDECIQGLEWVEAYIEDPIMIAEYVIYLEQNFCLDDWEDCKHLVVEHFANMHTMAMEKFFIPTEICMSEPVCGADPPTKPPFF*
Ga0006241_107671	Ga0006241_1076711	F073414	NKKTEADDNECPEGQSFDVSQGKCVAKESAFGDPKADSAIGDLASNGSDVGDKQQVEGCPEGHAINPDSGICEPNQATADKTDNIGQTNTSIATEKKLASIEKSLKALSEKKPTAQVGLEDGVHSWKSVAENMAPSLRKFGKFEFDINLESLRSVNTKQTKDRQGQVTESFRASPLQLQEAVSISGTHATQDLDTDVAIVPGGLSF