3300003726: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3B (Custom Analysis)

Overview

Basic Information

• IMG/M Taxon OID: 3300003726
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063445 | Gp0056834 | Ga0006122
• Sample Name: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 3B (Custom Analysis)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10321741
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	1
Not Available	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Colorado Plateau and Sonoran desert
• Coordinates
  • Lat. (^o): 38.42
  • Long. (^o): -109.4099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001042	Metagenome / Metatranscriptome	794	Y
F059546	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0006122_102753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus	620
Ga0006122_103082	Not Available	532
Ga0006122_104734	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	1227
Ga0006122_106408	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	917

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006122_102753	Ga0006122_1027531	F059546	LKKIMMLAALLAMLVVAAIPAIAQVEQGFEQETESGEAEQSFEISSTGDNGSQCANVNGTLNTGNLQNTNGMIQYASDIEELEQEDIGSDLSVTGTGTVTCEQQVNQAAAAG*
Ga0006122_103082	Ga0006122_1030821	F059546	MKKMMMLAALLAMLVVAAIPAIAQVEQGFEQETDSGEVEQSFEISGSGDNGNQCANVNGTTNTGNLQNQSGSIQYASDIEEFEQEEIGSDLSVTGTGSVTCEQQVNQAAAAG*
Ga0006122_104734	Ga0006122_1047342	F001042	MPKNCCAYLTVTLQRFFGFILIQAVIIKLMTTSHPIEGNFASDFSKDSEAEADDKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSVSNKNNKASHEFTEKSSLLLESYQKAVPKLLGKAESCLEEAIDLINLIVSASEAGGENG*
Ga0006122_106408	Ga0006122_1064082	F001042	MITSHPIEGNFTSNFSEDSEREAEGKIVIDKLLVNKLTELLINSIYSVHVSRRSEIFLTSLDMHLAENSISNKNNKASHEFTEKSSLLLESYQKAVPKLLVKAENCLE