3300003723: Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003723
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093333 | Ga0040873
• Sample Name: Hypersaline microbial mat communities from Yellowstone National Park, Wyoming, USA - Beowulf (BE_B) (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 7794074
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026046	Metagenome / Metatranscriptome	199	Y
F026606	Metagenome / Metatranscriptome	197	Y
F042425	Metagenome / Metatranscriptome	158	N
F048414	Metagenome / Metatranscriptome	148	Y
F053392	Metagenome / Metatranscriptome	141	N
F056380	Metagenome / Metatranscriptome	137	N
F092365	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0040873_102572	Not Available	1164
Ga0040873_102969	Not Available	1689
Ga0040873_103006	Not Available	998
Ga0040873_103089	Not Available	1400
Ga0040873_103345	Not Available	631
Ga0040873_104184	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	596
Ga0040873_104488	Not Available	591
Ga0040873_105767	Not Available	672

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0040873_102572	Ga0040873_1025723	F053392	MSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSVIDLYIIGTVTPDALLSIYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTITLLGANGASAQTYTVYFSVIRAPYLPSASSK*
Ga0040873_102969	Ga0040873_1029692	F048414	MNFEKLKENASTSLFYSFLLFIVSFILVIAGLNYVWGRPALIWLPLGIWNLLITLGIFLSIMIILVIAVRRLL*
Ga0040873_103006	Ga0040873_1030062	F053392	MSVPSYVTLTGPQTTVMPASFNIAASAAAGSVIQGSILAFGPQSPAVAAPQVPITEVWSIVDIYIIGSVTPDALLSVYINGYPQDINPDLNSLNLNNLTRWKLMQALKLPPASTWFTTVTLMAANGSSAQTYTVYFSVIRAPYLPSTSSK*
Ga0040873_103089	Ga0040873_1030891	F026046	LLEIYEGYLNKPTCNALNNIRIGRDGKGYRKLRKEDIPIEWINYAKKHGIKVRDRTLIIGDALDPVDVNCIPVMNAFYPQTSSGKWCCTPAIAQYTNNGDQTPTQVCFSAGGNNAIYIPYFGIALIDANGNLDLLMDTNNYISNATPNFIQPSVTSPSKVCGSQQYNGSIYMSFAGIPTTTMTISTAYLLIGTNTLASGGVFSTVIEWTGINYKPTVNFPLTINIYLSVS*
Ga0040873_103345	Ga0040873_1033451	F056380	VPATEAPGEANNDAAESPEEHENMGGETDRLYVTVQVIIAAMPLLTISSVVLLVVFSIQAIRYHSPFMTFLALWFLVLGSQACILFESHRVGEKMAEHCCDGTDNSANITLWSILSITFFVLSTIFIWREPTFTGRFGTIGLYIDAVTVTLMVFLSIIWLLDTAYMINEVMPIRVD*
Ga0040873_104184	Ga0040873_1041841	F026606	MIEENEYEKIEQKLEKFLSIDVGELREKIIEKAVWLNKDYSKMVVLRIYHDGSYDIGIGQEGSHDGLSSKERLWIEFSLIEPWDLDEYENVFESEDGYIDQDTEEEYKNDDEFLEAVRISVTSGFYDDFEYEWEKFLKEFDEWYEALKGNGE*
Ga0040873_104488	Ga0040873_1044881	F042425	MVICMSKPEVNEPCTGQCQLEHRLTAIEYSLKELNMKVDLLTSNVKSQADDSKRYAKVAVYISLTSLAVLASVLLAVLVK*
Ga0040873_105767	Ga0040873_1057671	F092365	LGERSLRILDNQLGLRILIFISPMTRSYEIFWQDIHGRFIKKLDSIKVCSIFSVAYCESTYSSRNMLIDIMKCRDIHVGILKTLVPIPSEVYNAYAYARATGDYREYYKLVKDILTELRGKLEDEIDEMIKFNYAEMTNIITNFFNSQLLEYGAEIGNWITGNPLYEEHRLYGQYCHNCFNPVCNDIERVVITEKAVVVRK*