3300003722: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2C (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003722
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063445 | Gp0056425 | Ga0004770
• Sample Name: Soil microbial communities from Colorado Plateau and Sonoran desert - Soil Crust after wet up 2C (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2352205
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Four Geographically Distinct Crusts In The Colorado Plateau And Sonoran Desert

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Colorado Plateau and Sonoran desert
• Coordinates
  • Lat. (^o): 38.42
  • Long. (^o): -109.4099
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034588	Metagenome / Metatranscriptome	174	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0004770_10262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Microcystaceae → Microcystis → Microcystis aeruginosa	951

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0004770_10262	Ga0004770_102621	F034588	LPRWRLHPPASPLIRTSGCPSFRISGFTGDRSSSRLDSLSFGGAGCESSRSPLRFASPVSPTISFWVAPDPHPPVPADFRSESPRSSVPSGRPLRISGLLRLFVLGFVAQTFPKSPWFLLAQRRRFRLSRVAPKLPSSADPYLPPQVAPASASTAGSMITPWLNRTLHPQLAPRMNLRYHSGTSIPDLISSALLISIHCPQSADHEP*