3300003719: Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003719
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093341 | Ga0040881
• Sample Name: Ferric microbial mat communities from Yellowstone National Park, Wyoming, USA - One Hundred Spring Plain (OSP_B) (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21071026
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008949	Metagenome / Metatranscriptome	325	Y
F011097	Metagenome / Metatranscriptome	295	Y
F021133	Metagenome / Metatranscriptome	220	N
F030159	Metagenome / Metatranscriptome	186	Y
F035135	Metagenome / Metatranscriptome	173	Y
F063848	Metagenome / Metatranscriptome	129	N
F069056	Metagenome / Metatranscriptome	124	N
F071411	Metagenome / Metatranscriptome	122	Y
F075083	Metagenome / Metatranscriptome	119	N
F083455	Metagenome / Metatranscriptome	113	Y
F090627	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0040881_100348	Not Available	1122
Ga0040881_104541	Not Available	1014
Ga0040881_105451	Not Available	627
Ga0040881_107200	All Organisms → Viruses → Predicted Viral	2767
Ga0040881_108384	Not Available	979
Ga0040881_109448	Not Available	670
Ga0040881_111521	All Organisms → Viruses → Predicted Viral	3380
Ga0040881_115295	All Organisms → Viruses → Predicted Viral	1384
Ga0040881_115937	Not Available	533
Ga0040881_122158	Not Available	922
Ga0040881_122159	Not Available	780

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0040881_100348	Ga0040881_1003481	F063848	KKRSVHDPTLSVIHYQEQLEKMSKAFEKSSTRRNQRAVNGFTVLKQVQNTVRDYLNEVSASMKAPVIAQLAVEFIGIAMAYLKGSNEGYNSYALTGRVAQIATLRATHIVHATTLTCAQVGEIINGMLKKLSGVTADPLTFTENDGVCEAKVANPLTKLSVASAGTGLTVALTDILKAKTPEEVLMAK*
Ga0040881_104541	Ga0040881_1045412	F071411	MSEDDKMLYRMKNMADIRTELEKHIDNIAEQLIAQQLEDNLQDVIDDAIDAQLYIDLSTKEPVGFDIGIVIGGPNIRLIYNRGACQLRGWWGSLNDIKDVDNEICETILDYLTEIYRQ*
Ga0040881_105451	Ga0040881_1054512	F075083	MDLAEMPETESQKQIQKQKLIDSLGELDIDFEKGEDTIRIKGLAGYVYPGHIIVYQIPDKKVVFEEFGDVNRIILNSTDETNPGIKQILLDKSVYARYDFPYLIVQF*
Ga0040881_107200	Ga0040881_1072003	F008949	MSSQTVKLGTQTITPKVQDLGNSYYIEFQVNITKYLNNPVNHTMDVKFSCNKYKQVVVPSANPLSSPTVQTVQKTIQECVDEWFDQHKSVYEVA*
Ga0040881_108384	Ga0040881_1083842	F071411	MSEDDDKMLDTMINSADIRTELEEHMDYIAKLLKDNLQDVIDNAIDVQLYINLPDKEPVGFDIGIVFGGPNIRLVYSRGACQLRGSWGSLTDEKDIDNEICETVLDYLTQTLSSRGEK*
Ga0040881_109448	Ga0040881_1094481	F021133	QIYENGNHAIKKICEMEPDDKMANFSATDCIIGTANTHLALKIAKEKGYPPDVIEYLENQSRQEQWHCQLQIGKPPKPYDFVVAQKHREILLKHGIYVWMGVMQLLGEKIALAKAICWRRNDDPHFVNKFATVDEYYHTTYPLLLLSKYASEEELEKIVELQKEYIVNIFKIKEGI*
Ga0040881_111521	Ga0040881_1115214	F069056	MSEPKVDMNKVIMSSIVNIKPQPDNTTEVYLSLSRLFNEIMKVREGFSVYKIVVDETKVYVYINVPTNLFGDLQSLIQDAQTRMTILKKSILTMMGDLRQIGYVKDIIQQNDDGIIVIAINSTVTPTSPGVPNAPTW*
Ga0040881_111521	Ga0040881_1115215	F090627	MHLPGRLSIGINGYVRVMLNGKVIYDDTNAITTQFLQYLQNMLQGTVPTITSIYVLAKPNGTPINLNNLTFQNNYQQVNMIFLNQYVPQPIEALELWISTSVGNYPVAVLQFQSPITQSGELAVQWTISIQVPLIVQGAETFGISDSIPQILMQLFVPQQYFSTPIQLTSTQPTLQIVSTPQVTPTFIAPSEAGVGAVAYITTSSTISTLSALLYLLGQYIMTVSQNNLNEQAVNSLIIASAFITLTSSNITSVVP*
Ga0040881_115295	Ga0040881_1152951	F030159	YIIPITLPPRPDWGGISSMRMKVLYVAPIFHQFQGYGGLSFAWTRDSVEIPFYPEMGTCRPYLTTLPDGKLKVTMGGYHSDNYIDGVAIYLDKSVISPKGKTLVTSPSLIFGQTSPGGSYYVISESPSSTNIIYQGVVTYTFGKKYARVYLNLNANNWGFVNIYTRYRSRSAPDLQQMYGQTPNPNNTSAYYPVVERNFGSLVYLSDYAYGMPFALEYPRTSRFRVDDQVLWVITTNSTSPVWVELEGD*
Ga0040881_115295	Ga0040881_1152952	F011097	MLRDVVLYTSGGTDPFTSLTTGGSPITGNSSNYQFLRFHPNYARLHIYITGLSGTSPSIQFTVGTVAGSNNYTLPPITSPIYIYVIGNENRTIITYLNTSSQVLQQVELPYNVFLNGVSVSWSVAGTSPSITAYIHFEFEDEEEGEE*
Ga0040881_115937	Ga0040881_1159372	F035135	MTYVNEEFTTPLRQKRIHIIPRSIKYGQQFITSFFFDVXDDDEYQYIIFTFLMKNAFRIYLNIWREQRKFISYLKTFKNEFKNAFDYYQLLLITTKERIYQTTHTIACFFDFENDIHEILTIYVNELFCNYV
Ga0040881_122158	Ga0040881_1221582	F083455	MHVDLFSYRLGISSLLAKDVIIALLGTALAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLMTIAFALITYIPPVDDIL*
Ga0040881_122159	Ga0040881_1221591	F083455	SSLLAKDVIIALLGTALAVSLTLANKKGESLLIQSTMMMPVAFAIHALPHINYISLNTIFDDGIIATGISLVLDYITTKAERPDLKYRFINMYILLTLYAIIKYPSDVLEFALNSVLMTIAFALITYIPPVDDIL*