NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003711

3300003711: Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome, Counting Only)



Overview

Basic Information
IMG/M Taxon OID3300003711 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053071 | Gp0061171 | Ga0006817
Sample NamePeat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 18 (Metagenome Metatranscriptome, Counting Only)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size4449949
Sequencing Scaffolds33
Novel Protein Genes36
Associated Families32

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available24
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica2
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE00682
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Draconibacterium → Draconibacterium orientale1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePeatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomepeatlandpeat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationGermany: Weissenstadt
CoordinatesLat. (o)50.13Long. (o)11.88Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000396Metagenome / Metatranscriptome1185Y
F001953Metagenome / Metatranscriptome612Y
F003505Metagenome / Metatranscriptome482Y
F004372Metagenome / Metatranscriptome441Y
F006738Metagenome / Metatranscriptome365Y
F007465Metagenome / Metatranscriptome350Y
F007739Metagenome / Metatranscriptome345Y
F009513Metagenome / Metatranscriptome316N
F011719Metagenome / Metatranscriptome288Y
F012853Metagenome / Metatranscriptome276Y
F015068Metagenome / Metatranscriptome257Y
F015630Metagenome / Metatranscriptome253Y
F015701Metagenome / Metatranscriptome252Y
F016375Metagenome / Metatranscriptome247Y
F016476Metagenome / Metatranscriptome247Y
F017080Metagenome / Metatranscriptome242N
F019794Metagenome / Metatranscriptome227N
F020652Metagenome / Metatranscriptome222Y
F032561Metagenome / Metatranscriptome179Y
F033440Metagenome / Metatranscriptome177Y
F042779Metagenome / Metatranscriptome157Y
F046221Metagenome / Metatranscriptome151Y
F055499Metagenome / Metatranscriptome138Y
F056192Metagenome / Metatranscriptome138Y
F060503Metagenome / Metatranscriptome132N
F062515Metagenome / Metatranscriptome130Y
F064456Metagenome / Metatranscriptome128Y
F067447Metagenome / Metatranscriptome125N
F070926Metagenome / Metatranscriptome122N
F076696Metagenome / Metatranscriptome117N
F080954Metagenome / Metatranscriptome114Y
F104288Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0006817_100043Not Available768Open in IMG/M
Ga0006817_100052Not Available596Open in IMG/M
Ga0006817_100075Not Available603Open in IMG/M
Ga0006817_100136Not Available588Open in IMG/M
Ga0006817_100188Not Available613Open in IMG/M
Ga0006817_100230Not Available818Open in IMG/M
Ga0006817_100490All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica2441Open in IMG/M
Ga0006817_100513Not Available1813Open in IMG/M
Ga0006817_100545Not Available508Open in IMG/M
Ga0006817_100620Not Available590Open in IMG/M
Ga0006817_100662Not Available576Open in IMG/M
Ga0006817_100798Not Available508Open in IMG/M
Ga0006817_100957All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Rhodopirellula → Rhodopirellula maiorica752Open in IMG/M
Ga0006817_100968Not Available760Open in IMG/M
Ga0006817_100975Not Available697Open in IMG/M
Ga0006817_101051Not Available594Open in IMG/M
Ga0006817_101056All Organisms → cellular organisms → Bacteria930Open in IMG/M
Ga0006817_101250All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068800Open in IMG/M
Ga0006817_101293Not Available1305Open in IMG/M
Ga0006817_101329Not Available645Open in IMG/M
Ga0006817_101574All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera581Open in IMG/M
Ga0006817_101577All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Isosphaerales → Isosphaeraceae → Aquisphaera544Open in IMG/M
Ga0006817_101818Not Available1037Open in IMG/M
Ga0006817_102148Not Available528Open in IMG/M
Ga0006817_102365Not Available904Open in IMG/M
Ga0006817_103051Not Available556Open in IMG/M
Ga0006817_103118Not Available503Open in IMG/M
Ga0006817_103184Not Available790Open in IMG/M
Ga0006817_103207All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068569Open in IMG/M
Ga0006817_104939All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → Draconibacterium → Draconibacterium orientale518Open in IMG/M
Ga0006817_105036Not Available529Open in IMG/M
Ga0006817_105692Not Available535Open in IMG/M
Ga0006817_105768All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium703Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0006817_100043Ga0006817_1000431F011719RIIPGNWGKVGPGWLAHPLLSRIERFGGGGRIHQFLWRRSRVVSNREKGTVRRGAMRSRSESSQVVRAGFESGRMAVTQRVFGCYCASARAGDSGGLRNEVSQRKDAERRDKMSVRTGKDTWSGQDP*
Ga0006817_100052Ga0006817_1000521F020652RPVDQFVPRPACTARTWHPETV*REPFAPRCRFYPASDRCSGACPLFSVPVEACLSIRPFALRRRRLTFRSVPTAGSTFLAYIFEAIPKSPLDPFGPVLPPPLRLFVAVRGAFNVRNPLSSPIPELPDCDQAFAPLQDLSIPRARSAQLDSKQRSLPLRVARSSFAPRCARNNFLS*LRNGSSFRIRYFPPGSLSFEP
Ga0006817_100075Ga0006817_1000751F033440RFQVTQAAVRSPAGMRGQSIACSAVEAVFYCSPQPSFFLTGYGSALQNSLASRLLEANASKRPFTRPQRLFPCENHRGEETLLAYFFDEILSFSSSPFGFELPSSAALITRPGLIVAQNPLPSRKPKTLKRPSNFRSPPGLSSLGIIALNWRLDLRLTFVPGPMTFRSPNALIVLVTKRARITAQVRYRSPGLLLSEP
Ga0006817_100136Ga0006817_1001361F000396VPSDPISQPNSPPACNGTELCHQDGRASSLRLPAAFFRKQRIKASRLTCQPSWLEPVSRSGLSLSRNDCPFPGHHFEVKAPDLLLRHPADHSSCPFGFRFPHALRFAPACAGSLPQSRCLTPVRHSQPFLGSPLPFGAFRTLKDQSVQPDSWPGSSPSKRSRLPVTPRHRFYFISYDAGSPLQAR*
Ga0006817_100188Ga0006817_1001881F015068FEEQQASEDVADLER*SAAETLVIGTSDRSWQIETGGGERREIGRSRKAGRRTAIPAERFDPEGGKSPKGEWRLEAQSSSESWKLQRARSIEAAQAGANRTG*
Ga0006817_100230Ga0006817_1002302F032561GVSILTISQYSRCCILRLPQRPTLQLSLAVASSWLHRLENPRLSSAVLHSGSTGGQLPGSDRRCIDQLDRLRTSGLRRLFRSSDRPVAIPFDSRRTILPPARPMINLRLASTPSFGSAGSTSGFRRLLLLPPGWLRLRFSPAVSPSGFTGCESFNFR*
Ga0006817_100244Ga0006817_1002441F070926FQVTL*TVRSPAGMHGLSMACVRKGGTFSFAPRIGFWPIRINAREMTRSFSARSSDLGTAFRSPAATVPFRRPPRQD*RSRPIPSIQLRTLPQARSVRSSLPLPHSAEWGRSTLLTRCLIPDSKFPNVHRLPLPFRTFQSLRLKALDRRRSLGKFTLADSPIFLRSPTAQLSLIDLTAGSSFRIRYRPPGSLLSE
Ga0006817_100490Ga0006817_1004902F007465MPSTDSKTKPSSSVAADPSTMMASFWTQWLEQSSRGTQALLEAMQTVGDPQQIQRRWLDAVSRSLDDFMRTPTFLELLGNNLKTITDLKGMQDQVIQDTARHFGLPLAADITGLFERLHSTEQNILNRLQAIEERLKGIETKH*
Ga0006817_100513Ga0006817_1005131F064456LDGFMRTPAFLEVLKQSLKRMIDLKQMQDQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQLAKLDDRLKAIEKTLNSGPAEKNPKRKRATTKEDIGDDAPNDPAD*
Ga0006817_100545Ga0006817_1005451F060503PKGFTSTTMAHRRHARPEPRQSGQRDVICFAPRTPLSNGVRIGATQPICTPFPIGTDISKRPFTRSQRKPASRPPFRGHCSRPTCSISTGPSPNPLQSDVPDRLSGLHSPSGVFMPLRIVAFSRSGAPEAHLLKLPDFPSLPAAITHKCVGCGSTFRVRYFSPGSLLP
Ga0006817_100620Ga0006817_1006201F007739KRAAKSKIDVAGFRIIPGDWGKAGSGWLTRLLLKRAARFGGGGRIHQFLWRCSHTVKCE*
Ga0006817_100620Ga0006817_1006202F062515MLKTTPLDCELKGSLREKRRDPWLWANASSKAMADPELVVKTRAKRFAG
Ga0006817_100662Ga0006817_1006621F076696RPSGSARSPAVMPGRNAAGMPLADSFSCSPPQLLFCVGLTLQSASADRHTRSLCLATAFRSPPRLRPFGRLHEGSMFPACRFGSLPNPASGPFGSPLPASLRFCLAYAGPIHAAFPLPDADLDFPDRYSASAPLQDVSRRFNASASASLEGSPLPATRFPFAPRCRLRFTIARFGSSFPVRLRLLGLLFLL
Ga0006817_100798Ga0006817_1007981F017080TASSGCAGFEPPTCVGCPTSGSTGGQPSGSDRCSALRLDRWQAPGFRRLLCASDRPAADLPTCVGVLPPARPATNCRLTPGADSSARLVPNLRLSPAVVAAFSLRLLLLRLSSLRWLPPVCHTGGELPTRIGCYALRLYRSRFIRLASDASTSGWAFDAPLASTEPCIA
Ga0006817_100957Ga0006817_1009571F007465MPSTESKTEPDSSVAATDPSTLIASFWTQWLEQSSRGTQALLEAMQGAGDPQLLHRRWLDAVSRSLDDFMRTPTFLQLLGNNLKAVTDMKGMQDQVIQDTARQFGLPLAADITGLFERLHSTEQNIINRLQAIEERLKAIETKH*
Ga0006817_100968Ga0006817_1009681F080954SELERTFPATQEDEGPKEVGDSPRGASCGMQDSREIGRPIPGRAGDAKFGSSRSFVAD*
Ga0006817_100975Ga0006817_1009752F055499LITRSTADAASSGYPSGRPPAFAGAATSGCAGFQNSDLRRRPALQLDRWPTFRLGSVSCPSARPAANLRLASAVPHIRSTFGDPSSLRLTILVPSSLRRIALPPARPTTYLRFASDAVLWLGWRLHPACAACCPRPPAGSASSLHRLLHPPTLPAVNLSACASWLLLRLSL*
Ga0006817_101051Ga0006817_1010511F004372PHRRGERYIDKEEEMILTDSATSHRVPGPVLSRDGDRFAAWLADLTWAKLFPEGRDLYYDGECPDKFTEAIREEFGFDPSADPLWGKWVEGDHGEPGFISYGFHCPANHIDAIYAMHGSHRFPGRVLILCR*
Ga0006817_101056Ga0006817_1010561F009513MFDMILENYRKATESTMKLQQDVLRTWTMQLPQMFGPQTFGLPFMGGPASTGGPASGSAMPGAAWLAQLSDAQKKWGETVTDMLNKHRESLDAQYKAGIRTIEEAFKVGEAKDPQQFRRLTEELWKHSLECLKTVAEAQTRDVQAAMQKFYEVASKSTSGLKV*
Ga0006817_101250Ga0006817_1012501F001953LRAPTNRRIQKMKKLGLLLLPILAITLMLGGNAFAQPAPGDGSYYFVTYYSNANTSGAPDGTLRIINDGDQATASPEGVENGTLWAAIYVFDDSQEMQTCCACVITSDGLLSESVNKELVNLNINITGRGEVQRGTIKVISSSNGNEFSPAPLTGLRGWMTHIQATTNGIPTTPGGPDGSKGPWFVTETALADSNLSGTELANLGETCSFGRTLGSGYGFCLCTPEDQDF*
Ga0006817_101293Ga0006817_1012932F015701MEAPGMRNITQSGIETQSDPLVTVTVSGEFSECPGMHAICVRHSHLPEVYGEGETTQEAAEDLLRQLLFESGHVDNNWQREDLERAIEEVRDFLNGPSQAAEADFMTPISHEHLRLASLPLLGKGETTMKPGLTNLRFEKVPDSATGHEVALEHSGFSEIRAKGRSLREACELLRQELGRCAGWAEDKWHNLDLNQAIEDLEAFTKLSTAEGTLTIAVGDKVFVKIKDVVYQIPARLYYGGPLDTSGVPRVHTSPDPGQNEE
Ga0006817_101329Ga0006817_1013291F019794GIASLGSTGGKHSAFTVCYALPFVRRLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGFRRLLLQPSACASCCYDSPACAGCRPFAIPAANFRLASAVTPSRFTGFDSLDLRRMFLPPAGPLVHPLFQLDLASPAEPSMSIQSPPVLAPSGSASFNNLRLASVFAMSGATSDPSAAFASGFTLWLGLRRFSDSRQLFVPPAIPATNSQCP
Ga0006817_101574Ga0006817_1015741F003505MSSDKSNDSVSSAADPARDFLEFWRNYFEQTAIQTRILLEGMQGGKSLDQLHTQGLESLSQCLDGFMRTPAFLEVLKQSLKRMIDLKQMQDQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQLAKLDDRLKAIEKTLNS
Ga0006817_101577Ga0006817_1015771F046221MSSDKSSEGRSSAADPARDFLEFWTNYFEQTAIQTRILLEGMQGGKSLDHKSLDQLHTQGLESLTQCLDGFMRTPAFLEVLKQSLKRMIDLKQMQNQMSQSVAQQTGLPLAADVTGVFERVHSAEQTILKQ
Ga0006817_101818Ga0006817_1018181F016476MGFCSLQHIRNPRSTFREPSQPAKFRLQGLATLLTVCSLESRAGFVSHRRRSWDSPFGGVLSLQASAAFRPGRTHVPLAQRYFRRRSVRPARRASVSGFKPVGTALRPCGGLTRQSPAPPLGFAPLGFTCEDLAPDSSGTPLTCLASPDDYSPSRPTPQSVDQPSPCLARPVPKHRPAEATLVGFLHLPVPDHLSSPVPGLWNSPFVASCITADSPTIFGHRKNPAEAVQDRPWVPSIA
Ga0006817_102148Ga0006817_1021481F004372REGERHTDKEREMTVTDPAATLIPGPVLPKDGDRFAAWLADINWAKLFPEGRDLYYEGEHPEKFAEAIREEFGFDPSADPLWGKQIEGGDGQAGFTSYGFHCPAEKLDGIYDKHGSRRFPGRLRILNR*
Ga0006817_102365Ga0006817_1023651F015630MAVDVQLEDHIREIEGLVGGYLRSPQDQATRQALVAELDKLDDQTDRADAYGNFRSVLVRYQVPRSWVIGATSDTSTAEDVPGAEFKAQVALVKAARNAIRDTTAEAQSALQRANDELAEVRRHEAGG*
Ga0006817_103051Ga0006817_1030511F056192EVAELER*SVARWYVKTIATRRGAKADRATRYGKFFRLKPGRALGSGRTERS*RGAEARRQTESSRMAGWQRATRSDRAPPGEKKPGAAGSGKPNGPSEILERLRRCRPGTSTRPRGFAARQNFAAGE*KAASRSKLLPERRADAHQSYDPRLGNTGCGEQRAYVTSAPDAMFRPCMPVGERAIQ
Ga0006817_103118Ga0006817_1031181F042779LVSRPRPGPAALLLSFEANLSREKEGTRMTTVCLSEKVIASLENLDEPLDFCDESGHLLGSFIPEAAMQELLPIAEAEGDLRAVEGQLGPEMCVFGFETDLE*
Ga0006817_103184Ga0006817_1031842F067447GPNPPHFAPRKNYFLLDTYTKRYTRIAPWLTLSACAGRGLLRAQHFSALPRSRIAPRSTLGFQRLTRIAPCPALPALMLNPDCSVFSTCRSVPCTDCSALVPSRSAPATNYFVFDTWPFRPAPGCLRALDVLPCAVYRSLGVQHLALAPVTNYFVLDAWPSVQRPDASVLSTSRPALPADCSALTALRCASYGLLHAWHLALAPVKDYSSLDT*
Ga0006817_103207Ga0006817_1032071F001953LGLLLLPILAITLMLGGNAFAQYPPPAGDGSVYFVTYYSNANTSGAPDGTLRIVNDGSEATMAPEGVENGTLWAAIYVFDDSQELRSCCACVITSDGLLSESVNKELTSNEFTGRGEMTRGVIKVISSATWDPTAPWPSTGLRGYMTHIQATSTTLAAGKQAVEKGPFFVTETALSDSNLSWTEQSNLG
Ga0006817_104939Ga0006817_1049391F004372QGERHTEKEKQMTLTDSATSHLMPGPVLPRDGDRFAAWLADLTWAKLFPEGRDLYYEGECPDKFAEAIREEFGFDPSADPLWGKWVEGDHGEPGSISYGFHCPTERIDAVYAMYGSHRFPDRVRILCG*
Ga0006817_105036Ga0006817_1050361F104288SFTVPEPAKVPPGYVYTTPYALEVGKIVVFDLGAMQVDIDGHAWIDPFAINVDPAITKNAVLLEKLEDGTIKVNLSRCHGHSWRRGPKPEKKHGLDWIMVSEFVGQVPPGTVLPAT*
Ga0006817_105692Ga0006817_1056921F012853NDADPKQVSVLLLGAKTMAVQAKDDAVTMQSYSQMGMKWEAHVAAIAEIREHVMAMKQQAIELKAAQGTAEPWQISVIHRIEPYLAEMAKDNEAVIDEMNAHPSLFGTPAWNAYLQANADSATYLASLIVNAVNNGAIRQKMQDYDQPADTCGLSGVANRPYGRQG*
Ga0006817_105768Ga0006817_1057681F016375MLPINWKKFLHPAGVYRLEYPAHWDQAQRDEARSCGFGPHDRDDVGLWISLMPVSVDSDRLAEELPKILSQALPQMEGGNVRRDPTLRHYGVKADVHKEGEGGHYWMIAGGDVVLFASSQLPAAERHIWNPAFEHLLATLEITRDEELALRQLTNEVLTLLRQRHPEQDFQLDEKGIRGRNSV
Ga0006817_109164Ga0006817_1091641F006738DATLRIVNDGDATCIATDSSKAICEFTDDVGGTLWAAIYVFDDSQEMRSCCACYISSDGLLSXSVNKELTSDEFSGTGQIQRGVIKVVSSSSNDPTAPVPKTGLRGWMTHIQATTNGIPVYPASCIGDCALDTSKGPWFVTETALADSNLSGTELSNLGYLCSYGLNIGSGFGLCPCTW

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