3300003703: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003703
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0103008 | Gp0088351 | Ga0008091
• Sample Name: Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3743723
• Sequencing Scaffolds: 10
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil → Tropical Rainforest Soil Microbial Communities From The Amazon Forest, Brazil, For Analyzing Deforestation At Different Spatial Scales

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → tropical forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Amazon Forest, Brazil
• Coordinates
  • Lat. (^o): -10.0
  • Long. (^o): -62.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001758	Metagenome / Metatranscriptome	640	Y
F001975	Metagenome / Metatranscriptome	609	Y
F006338	Metagenome / Metatranscriptome	375	Y
F023129	Metagenome / Metatranscriptome	211	Y
F035644	Metagenome / Metatranscriptome	171	Y
F044324	Metagenome / Metatranscriptome	154	Y
F045561	Metagenome / Metatranscriptome	152	Y
F063173	Metagenome / Metatranscriptome	130	Y
F080954	Metagenome / Metatranscriptome	114	Y
F081396	Metagenome / Metatranscriptome	114	Y
F102643	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008091_100139	Not Available	756
Ga0008091_100414	Not Available	861
Ga0008091_100433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	670
Ga0008091_100556	Not Available	948
Ga0008091_100625	Not Available	695
Ga0008091_100928	Not Available	1373
Ga0008091_101528	Not Available	818
Ga0008091_102604	Not Available	512
Ga0008091_103247	Not Available	664
Ga0008091_106501	Not Available	605

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008091_100139	Ga0008091_1001391	F080954	SDLERTFPATQEDEDSVEVEDSLRGASRGMQDSRETGTPIPGRAGDAKFGGRWSFVAG*
Ga0008091_100414	Ga0008091_1004141	F081396	GKERGLVADSKELEAGQEPRAGRSISGENDQASDRETLKITGEHDCDELDGRSGAERMMTSSAGSGERHLEEVKPRRGSSPIGG*
Ga0008091_100433	Ga0008091_1004331	F001975	MASTTQQELQDQFLSLVSKSQEIALDAIKSIVDTVSTITPKIPTVDLPFADRLPKPHDVVAGGYDFAEKLLSSQRTFADEVVKATAPLLPGNSDTK*
Ga0008091_100556	Ga0008091_1005561	F045561	ARWVVGNVDLEPDFRKEAGGSGQEARAGRQPESRPANPCIGETPGASREGFFAVKAGGGGDVKAFPRCAGRKPGGAEAQEGRGSIGT*
Ga0008091_100625	Ga0008091_1006252	F023129	MVKTLPLACEMKSNLREKRRDPWHGANAPSKAVADLTLSGEDADIESQTCLCLVRRPVAQPSVQAS*
Ga0008091_100928	Ga0008091_1009281	F035644	MESSASPEDLALSEYVISDYLTESERDAEADIPVPDRLLPKREYRRLVEALRLSQRIGLLIWLNRQGLLTLGGKERLLYLQSKASFEALEAGLRFARRLSEEKKLQSDFQHQMRELNRRPQSKHFRQTGTRRIGVGYRDKGMLPEQSLRARRMAWEESFLPTESIPEELLNVLQKYLPHCLTEDGEWVDLSVFPGTFGSEDNSEMKTLLHPL*
Ga0008091_101528	Ga0008091_1015281	F001758	VTGEKPSQAGWLGSSESGSKGLKGEAEFTSSSGSVRALSVNAKKGLREEER*
Ga0008091_101528	Ga0008091_1015283	F006338	MLSGPATRPKTPLAVENSVGKLAAAEMWRQMPARERELGELP
Ga0008091_101779	Ga0008091_1017792	F102643	MGGRSHPKLNILGRPIAKKYSDGKVKRTLKRRSKVLETVKRETDGASNYPMGIQTIHFYSALQWFDRSTECTVRLLLRYYGRYLVCMFVNIKYEKGIIHGGR*
Ga0008091_102604	Ga0008091_1026041	F063173	PVNSQVAFRLQFSGIVFNIADLSKGFHGPCLDRVSFPARPLTLFRLSAFFIWLIPFLFRNRQSRPAVLIHSSNRLPSGNCDSLEFETSSSYLTESGTVSNRSSFLSPFFACTDGARTPPEELVNSASPFVSFDPLSEEPGQPA*
Ga0008091_103247	Ga0008091_1032471	F080954	RTFPATQEDEDSMEVGDSLRGASRGMQDSREVGTPIPSAAGDAKFGGSRSFVAGWASAAATS*
Ga0008091_106501	Ga0008091_1065011	F044324	KARKLEREDHLGIDGRAGDGDTLWIIAAGHTQHRREKIVNGDDGNDVVEVIRAEPEGAGTHEGIRALVGGNTTADVADPRLEQSFEVDASQAGVGSNTDRKAAPTAREQRVSTRDRGWPGGGSP*