3300003698: Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 2 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information

• IMG/M Taxon OID: 3300003698
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0069861 | Gp0055782 | Ga0003068
• Sample Name: Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 2 (Metagenome Metatranscriptome, Counting Only)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28283357
• Sequencing Scaffolds: 16
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium MLMS-1	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → anthropogenic contamination feature → contaminated water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: S. Glens Falls, New York, USA
• Coordinates
  • Lat. (^o): 43.099444
  • Long. (^o): -73.604444
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001633	Metagenome / Metatranscriptome	660	Y
F005374	Metagenome / Metatranscriptome	403	Y
F006508	Metagenome / Metatranscriptome	371	Y
F014988	Metagenome / Metatranscriptome	258	Y
F017604	Metagenome / Metatranscriptome	239	Y
F018726	Metagenome / Metatranscriptome	233	Y
F020300	Metagenome / Metatranscriptome	224	Y
F022154	Metagenome / Metatranscriptome	215	Y
F024439	Metagenome / Metatranscriptome	206	Y
F025292	Metagenome / Metatranscriptome	202	Y
F025432	Metagenome / Metatranscriptome	201	Y
F028190	Metagenome / Metatranscriptome	192	Y
F035541	Metagenome / Metatranscriptome	172	Y
F061584	Metagenome / Metatranscriptome	131	Y
F062539	Metagenome / Metatranscriptome	130	N
F091056	Metagenome / Metatranscriptome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0003068J53076_1001258	Not Available	837
Ga0003068J53076_1003787	Not Available	521
Ga0003068J53076_1004858	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae	3492
Ga0003068J53076_1007076	Not Available	540
Ga0003068J53076_1007548	Not Available	635
Ga0003068J53076_1007762	Not Available	925
Ga0003068J53076_1007813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium MLMS-1	578
Ga0003068J53076_1010927	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	4609
Ga0003068J53076_1011214	Not Available	843
Ga0003068J53076_1014168	Not Available	885
Ga0003068J53076_1016051	Not Available	796
Ga0003068J53076_1016554	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales	4018
Ga0003068J53076_1022446	Not Available	2126
Ga0003068J53076_1027560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518
Ga0003068J53076_1027868	Not Available	689
Ga0003068J53076_1040305	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	858

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0003068J53076_1001258	Ga0003068J53076_10012581	F024439	AVPRTTLSGLTSLSERSARRSDDIGSPPPPRRLYDHEEFRRSAVRAVRRPPGSSRRLRLPLRVRAKAPSPVMPDRLAPPGVSRPFSDVGGEIRMSRACLARHRPSSGFLTPSTVCSPSGLADTLGPLPLLGFSLARLFRTGRP*
Ga0003068J53076_1001260	Ga0003068J53076_10012602	F006508	VASGERTAKAVADPEPVVKTRKKIRRRVLTWFASRWRNHQPKRAEKPHSKSSARKVPDGP
Ga0003068J53076_1003787	Ga0003068J53076_10037871	F024439	PVVGADKSVDAPSGVSAAPWLFRGDVAVPRTTLSGLTGLPKRSAWRSGVIGSPPPPRRFYDHEVFRHPAVRAVRRPPGSSHRLRLPLRVRAKVPSSAMPGRVAPPGVLRPFNGIGGEIRMFRACLTRHRPSSGFFAPSTGCSLSGLADSLGPLPLLGFLLSKPFRAGRP*
Ga0003068J53076_1004858	Ga0003068J53076_10048582	F014988	MAFAPSTLITGAAVTGLTTPTYIIAVDTPPAINAKQYAVTALGGTQTGVDVNTVSKPFSISFFRPVQLRSLPAANPVTGVIKNIPMNQYKLITRKGAQPSANTPAMTARITTTIEVPAGSDTYEPEEIRALISSHFGVGFSSASGIADTVLTGVL*
Ga0003068J53076_1007076	Ga0003068J53076_10070761	F020300	GLPGVSALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGLGTTVRVWYDRTYGINAGLNKRLKYDFTDASGVVHPVPSDLGYNVLLVYRQAMNFAWEFGFSNNQSLRLDQNWRNGWSWNLQWHFLY*
Ga0003068J53076_1007548	Ga0003068J53076_10075481	F062539	LIRLSRKRDGTMTRQLPSLTGPQWIQGQSPRLIPLWLQGPSCLPFSLSWQSFTMSRALHPGIRLLRCLRPPSHTLAFSRPLTRQGGIGVPQFQDIRRIEIPLAACCRPGANGTTYRHASPVGTRHHPFWARCISHFHLSALTISTQVSCVSIGIRAGWSTSLWLEVAILLSLGFPPPRVPLVNAGQVALTPLFMCNPLNRLSICPVKGRTS
Ga0003068J53076_1007762	Ga0003068J53076_10077621	F025432	ENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGAPAGGQGQFIHTGVAAWVKDRLVAQLAVAPGVDNLDYKRMNYGVVLGVLPLNTDGMWLMPTFSMLVGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNNQSLRLDQNWRNGWSWNLQWHFLY*
Ga0003068J53076_1007813	Ga0003068J53076_10078131	F061584	AARLAVSPSKVRVIDSASRGLVTEPRWTLMKIGRSTECCERRSCRRIRLPAPTMTSLFPGSLCGLTPPPSPVPLRVRVHPLVNFASPSEHEPFRSCPARCRAWRLPWGFVPHRGISTRSPLPSELPMSRPTDPSSAFLTPSTVCSSAHLAGLFHPTTTSGIHLPGVISRCLARPPRRRPVPSCRSSARSCRR
Ga0003068J53076_1010927	Ga0003068J53076_10109272	F018726	MLADPVTVAAASPTPSLVLAVVKSDGYGSERVDTGANGYTVIINHSKPKGGGDKHYVQMTQTLNATNPYTGLTQKQVASVSMTIVRPAFGFTDAAIVALAKALTDFRDDSEVTTARLIQFQS*
Ga0003068J53076_1011214	Ga0003068J53076_10112141	F035541	ACPGDVACSLGYIRSKGMANHRATTIRRSDVKRLALIFTLAILAGALMVPAANAQSNLTNLNNIPVTDTLAVGTFEWDVWSGYNKGFERGRRIGTRLFGSLYDNLEFGMKWGISRTAGPVELALKYKVIDEYNGRFPVSLAVGVEGITGNSQRTHFDPTVYAVLGIHDVKFIGHWWDWYVGVNHNPTGMDTEDNSLFGGFKYWINDDLQFIADYMGYGDNEWYKLTGGFNYNWINHIGFQGWVERDSLAETNVFVLEMAVRADMRDLTAEVSDPE*
Ga0003068J53076_1014168	Ga0003068J53076_10141681	F035541	VKRLALISTLAILAALTIIPAVFAANTTDLNNIPVTDTLAEGTMEWDVSARYNEDFHRGRRIGTRLFCALFENFELGMAWGVSRPAGPVELALKYKVLDEYNGFPVSLAVGAEGITGNYQRTNFDPTYYAVVGLHDVHLGQSWWDWYVGVAHNPTGFDDEDNSLFGGFKYWINDDWQVNADYWGYNDNENNVIAGGVNYDWAKHIGFQGWVERDSVTEENVFVLQLAVRGDMRDLTAEVSDPE*
Ga0003068J53076_1016051	Ga0003068J53076_10160512	F001633	GARRALLPMHTLGALAFAGHVLPDATLRGMRCFGLMATVSTVSGRELLSEASSLGSVAPAGSGAPDVVLTRLQIGDSRPHRCHGDGTGFWPAVGPALRV*
Ga0003068J53076_1016554	Ga0003068J53076_10165543	F025292	MAFGLTSPLTGAAQTGFTAPTYTLTPDTAPDVNGKQWAITALGGTQTGVTTHSVASPFTQSAFRPKNFKVLGKTNPVTGLVSNVPMNTHKVITRKGVLPLSGQPYKNLNITTVIDIPAGSDTADPANVRAAFSAHIGALYQQAAGLGDTAITGIL*
Ga0003068J53076_1022446	Ga0003068J53076_10224462	F022154	MKKALAGVLAVALAGVMAGSAMAQVPNVQVYFDGAYTQTQRNCPGYAPFTTPDSLYVVMNNWNMNITGVDFSIQYPPALVYLADKAPDPILSVTIGQSPTGIAISWANCCPPDGFLPVLALKPLVMWGVCDCNQGPQAIVVGGYTPFGKTHPTAIRREDFTEHDGVGMTSLICPGFIAVQPSTWGQVKALYR*
Ga0003068J53076_1026550	Ga0003068J53076_10265501	F091056	MRKLWTAILVAVVVLGLAVPALAQEWVPVESPGSAVDQFAAVKYIRNLSDLAAQYRDHGLSLQLDGDNYEWLIFSDSCVRDNIEAELVILGRSRAHIIDPLAWSLHVDMLTATINQIDAICKELDKYNMSGPYKKLVGKIAKKAAEGTEVLDSIKKQLDLGEERNYSALAGYGQVLWKIGNDLICLVKDLDYANWTAFYSGYLAAGEPCQNGFPACDACWDPDYGCGENCPTIVPSPVIGKECPSKSCGPKKCKPKCGKCTKKPKCGKCK*
Ga0003068J53076_1027560	Ga0003068J53076_10275601	F005374	MRLLRLSAVALSIVVAGFSAGAYAQVRTTPAGKLFFEGDIVRHALDGQQGPFCVLQNQYKRGEAVAWRIRVQKPDGTPADGAYLKSVEVQLGNGQKLPAHFGGHGMPPTDFFWSLFWTIPGNFPTGSLGYKVNATMQDGSVVTWEPFTRATTQLMVIAGDPTPA
Ga0003068J53076_1027868	Ga0003068J53076_10278682	F017604	MSKGCDGAAGDTSDDNPDPETSARNRGQAARKGGRERGSGNEETRSPTRRESGDGSAEDQ
Ga0003068J53076_1040305	Ga0003068J53076_10403051	F028190	MTVKKFDGTTDIVFDALSPSAGDNVPAVWRQDTGNAAGLPVGLRSMVRMTTKDNGPKTARQVKLTFDFPYAVQDSTTTLYSAKDRVHGEVMFTVPVAIPATWINEAIAQAFNLIDHALIHSSAQAGYAPT*