3300003695: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003695
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0054869 | Ga0005272
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI075_150m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 14132859
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000155	Metagenome / Metatranscriptome	1877	Y
F006550	Metagenome / Metatranscriptome	370	N
F092109	Metagenome / Metatranscriptome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005272J53078_107145	Not Available	1120
Ga0005272J53078_121302	Not Available	612
Ga0005272J53078_121303	Not Available	609

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005272J53078_106301	Ga0005272J53078_1063011	F000155	LSLQMKFALAIATVAANQYDFMSEDELLSQLASNLSSAQMSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0005272J53078_107145	Ga0005272J53078_1071451	F006550	DKTVYATEGAPTHSFAEANGYAIYDFSKHFTNQKNAKDDFGNGAYSHDAFVDSEFKSLAEDYVSDVKAGGRQRQAALRSNTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELSYTRSNFEANKYGLKFVIHEEARLKNVHNVLQDSIQVAANKVEQRQSFDVISLADASLTAKAAAGAWDTFVAATDRSTANPLLDLGVAQLLIEGSGVGGRMSRIGMHPIDFAKYMGNTFIRGVASTKPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPCIANFQGPQRIGSAHDEETGDDKYFIIDYHLAAIIQAETGRQLTGCSTPTNWT*
Ga0005272J53078_121302	Ga0005272J53078_1213021	F092109	QCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATGALDDCLGPWSSGGQFNSTKSMCMNGQVVTT
Ga0005272J53078_121303	Ga0005272J53078_1213031	F092109	NGQVVTTGYNSMDCSGAGMVIPMDSGATDQCLPIDISGTVYGGYIRECVGQSTSALTGTLQNMVYTNPGCQGLPVDSDSAGVGVCLFDYRRTNSTTPYIILTANATAINVMKCSDNACSLNCVSGDSILLKDLGSCTDGSQAGPLYTGLSFKSMYVPNAGSLTPVVNESPSVTAYLYKNVDECNVDKKAGRVSAQSLGAATG