3300003691: Combined assembly of microbial communities in oil-polluted sediment from the Gulf of Mexico

Overview

Basic Information

• IMG/M Taxon OID: 3300003691
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0113788 | Gp0109249 | Ga0062319
• Sample Name: Combined assembly of microbial communities in oil-polluted sediment from the Gulf of Mexico
• Sequencing Status: Finished
• Sequencing Center: Argonne National Laboratory
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 180801331
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2
All Organisms → Viruses → Predicted Viral	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Oil-Polluted Seafloor Microbial Communities From The Gulf Of Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated Sediment → Marine Sediment → Oil-Polluted Seafloor Microbial Communities From The Gulf Of Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → marine benthic feature → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Gulf of Mexico, USA
• Coordinates
  • Lat. (^o): 28.74511
  • Long. (^o): -88.35914
  • Alt. (m): N/A
  • Depth (m): 0 to .01

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F001506	Metagenome / Metatranscriptome	681	Y
F009686	Metagenome / Metatranscriptome	314	Y
F025922	Metagenome / Metatranscriptome	199	Y
F071271	Metagenome / Metatranscriptome	122	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JT63_1002746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	9392
JT63_1016469	All Organisms → Viruses → Predicted Viral	3527
JT63_1027053	All Organisms → Viruses → Predicted Viral	2625
JT63_1033725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2296
JT63_1038282	Not Available	2127

Sequences

Scaffold ID	Protein ID	Family	Sequence
JT63_1002746	JT63_10027463	F001488	MARLELTLNFPKSFQVKTFNVKSEKKLSSLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEIYINKVSSHNKFINEKSQNLEADEYITIKIAYGFNVSQEKK*
JT63_1010156	JT63_10101562	F071271	MSFSSKFTGKNPINKQDPPNQSNAFSNIEHKGEEFLNFPQEKARQRTDEYLNITPDKDGLMKEQNSFEHGDTARHYFAGDQTSRSIQNKLGSFGKTLPGKTIGVIGSNLGGLIHEAQNIKDGRPILESVEDATNNFVGSLGSLFSTNTSTKILDRLKKYLPDGKVVK*
JT63_1016469	JT63_101646912	F009686	MFEKSFQRPTNYFNLEEERQWAIDKSLGILDWQGDNLNTEDLLRYAEHYE*
JT63_1027053	JT63_10270534	F025922	MARNRIIYASQSVWCNGDLLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPSVAVTLNTNDFGDVTTFATLAQVLPARRAMDATASISNSNLEVVDASLTGIGTYLHGVCVPDFAIACGALPGVSIWAPVQEECSLGSLADNI
JT63_1033725	JT63_10337254	F001506	MNQTLYKTKCQCNSEILLTKKHKLRKRGEGKLLQYPNPDEIISKTFKIKYKKKLSSISKLVLNSFQNKHIYYALDDILYLFKSNLSEQRDLLGIISSPVLFLQNNFSINFFDLWIHEIYITEIPKVNKFLINDAPKIEQHYITIKFLYKKIVPIKKSDLLW*
JT63_1038282	JT63_10382823	F009686	MSTEKEMFEKSFKRPTNYFALTSKEQWEIDRKLGILDWEGTGLTNKDIKRFEKHYE*