Sample 3300003678

Basic Information
IMG/M Taxon OID	3300003678 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0069861 \| Gp0055781 \| Ga0003067
Sample Name	Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 1 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 1 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	15992773
Sequencing Scaffolds	27
Novel Protein Genes	29
Associated Families	24

Dataset Contents

Total Genome Size

15992773

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	4
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Neratovirus → Neratovirus caenihabitans	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Neratovirus → Neratovirus caenihabitans

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

Ecosystem Assignment (GOLD)
Name	Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Ecosystem Assignment (GOLD)

Name

Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater → Groundwater Microbial Communities From Coal-Tar-Waste-Contaminated Well In S. Glens Falls, New York, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → anthropogenic contamination feature → contaminated water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater biome → anthropogenic contamination feature → contaminated water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	S. Glens Falls, New York, USA
Coordinates	Lat. (^o)	43.099444	Long. (^o)	-73.604444	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

S. Glens Falls, New York, USA

Coordinates

Lat. (^o)

43.099444

Long. (^o)

-73.604444

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001233	Metagenome / Metatranscriptome	741	Y
F005048	Metagenome / Metatranscriptome	413	Y
F005443	Metagenome / Metatranscriptome	400	Y
F007739	Metagenome / Metatranscriptome	345	Y
F008500	Metagenome / Metatranscriptome	332	Y
F010305	Metagenome / Metatranscriptome	305	Y
F013430	Metagenome / Metatranscriptome	271	Y
F014210	Metagenome / Metatranscriptome	265	Y
F014988	Metagenome / Metatranscriptome	258	Y
F016476	Metagenome / Metatranscriptome	247	Y
F017604	Metagenome / Metatranscriptome	239	Y
F022577	Metagenome / Metatranscriptome	213	Y
F028190	Metagenome / Metatranscriptome	192	Y
F029638	Metagenome / Metatranscriptome	187	Y
F030638	Metagenome / Metatranscriptome	184	Y
F060937	Metagenome / Metatranscriptome	132	Y
F060956	Metagenome / Metatranscriptome	132	Y
F061584	Metagenome / Metatranscriptome	131	Y
F081396	Metagenome / Metatranscriptome	114	Y
F082737	Metagenome / Metatranscriptome	113	Y
F091449	Metagenome / Metatranscriptome	107	N
F094695	Metagenome / Metatranscriptome	105	Y
F100491	Metatranscriptome	102	Y
F104572	Metagenome / Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0003067J53075_100045	Not Available	816	Open in IMG/M
Ga0003067J53075_100122	Not Available	697	Open in IMG/M
Ga0003067J53075_100147	Not Available	661	Open in IMG/M
Ga0003067J53075_100497	Not Available	586	Open in IMG/M
Ga0003067J53075_101086	Not Available	576	Open in IMG/M
Ga0003067J53075_101093	Not Available	639	Open in IMG/M
Ga0003067J53075_101136	Not Available	766	Open in IMG/M
Ga0003067J53075_101241	Not Available	737	Open in IMG/M
Ga0003067J53075_102351	Not Available	533	Open in IMG/M
Ga0003067J53075_102736	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	3323	Open in IMG/M
Ga0003067J53075_103256	Not Available	917	Open in IMG/M
Ga0003067J53075_103341	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	4393	Open in IMG/M
Ga0003067J53075_103822	Not Available	746	Open in IMG/M
Ga0003067J53075_104138	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Timlovirales → Steitzviridae → Tehnicivirus → Tehnicivirus pelovicinum	4734	Open in IMG/M
Ga0003067J53075_104509	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	4238	Open in IMG/M
Ga0003067J53075_104816	Not Available	553	Open in IMG/M
Ga0003067J53075_106132	All Organisms → cellular organisms → Bacteria	1514	Open in IMG/M
Ga0003067J53075_106289	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	2756	Open in IMG/M
Ga0003067J53075_109345	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Atkinsviridae → Neratovirus → Neratovirus caenihabitans	1746	Open in IMG/M
Ga0003067J53075_110098	Not Available	671	Open in IMG/M
Ga0003067J53075_110197	Not Available	504	Open in IMG/M
Ga0003067J53075_110432	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	718	Open in IMG/M
Ga0003067J53075_110850	Not Available	673	Open in IMG/M
Ga0003067J53075_112783	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae	1783	Open in IMG/M
Ga0003067J53075_113501	Not Available	503	Open in IMG/M
Ga0003067J53075_115215	Not Available	557	Open in IMG/M
Ga0003067J53075_121442	Not Available	744	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0003067J53075_100045	Ga0003067J53075_1000451	F060937	NRGAGNGREIEERTAGIIPGNWGKVGPGWLVQPLGRRIAGFAQRRQNSPAPLAGVATRHNAIEELGGEGR*
Ga0003067J53075_100122	Ga0003067J53075_1001222	F104572	MRPIALLAAGNGVGEPAAHRKVERPMSVKGKESVANSHSRYYPA
Ga0003067J53075_100147	Ga0003067J53075_1001471	F094695	TWLVMPSCSSLQRCELLDGGISVCSVRDPCFRETWDDVQWFSDESIESSWVQLFPVRRLPFPVASFRFSLSVVVRRFSRLRHSTLRLTCLLEVQPPINWPRMRTRSRLSCDFFPYSARQKQASVSPGASNLRHCPSSGFLTLSTSCSACNHGRFISPGLRSWGSTKSAYSLPSFDKGRVRRAWVSSPKLSPFP*
Ga0003067J53075_100497	Ga0003067J53075_1004971	F082737	VPSDPRYQFAPQPACQVACHIQHAGRISRLAPRPRYFSDGDSMLGRTPASLPVRSQNLEAAFHSPTTTSLLPDDRGGVRVPALPLQLCDTISVSPVRSGLHPRPVSRTAWDFYNQNPLPSGPAPLLPAALNRRSPSGQFAPPDQSTRSRWPTGNLPSETPDFPSLPTGGRIRYQHQRIIVPAPLRPCRLTVPT
Ga0003067J53075_101086	Ga0003067J53075_1010861	F005048	LKFEHTTPIAEDCLQDFVVETFASAKADDGLIALVVEPRHVERQGLVRTLRELGRRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGALS*
Ga0003067J53075_101093	Ga0003067J53075_1010931	F091449	LLATFRLQGLITLLAVYSLRSRAGFVSHRPRSWDLPFGAFSSWKVTGRFRLGRTHILFTRRYTLAPRCRGRLDKPQFLGFDPSESSWQSDVCLIRRLLVAPLGLTLPGYLTKALTRISPSLLSRASQQGLRLTAGASEFRSAFAPPHPPA*
Ga0003067J53075_101136	Ga0003067J53075_1011362	F010305	MKQAEKPHSKSSCCEALDGPATRPKTPLAVENGVGKLAANLAPNVSMGKRDWRTPNP
Ga0003067J53075_101241	Ga0003067J53075_1012412	F017604	MSKGCDETVGDTSGDNPDPETPLRRRGQVARKGGWERGRAHEETRAPTRRETGDGSAEC*
Ga0003067J53075_101610	Ga0003067J53075_1016101	F100491	MVPSDLPVACSPTGMHGQNVASGTGETALCSPPLVLANRGSVRRCASALNSGRSPFLDTAFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSCSFGTALPPPCGLLMALRGTINIRYPLPDPISGLIIRLRVSAPLRELSFPRDQSPQPGSGLSLPLQVARSSFTPRSAATVLFITQ
Ga0003067J53075_102351	Ga0003067J53075_1023511	F001233	LRWAAAINRLRLAVSRIIPGDWGKAESGWLAQPLLSRIARFGGGGRIHQFLWRRSRAVSKREKGTAR*
Ga0003067J53075_102736	Ga0003067J53075_1027362	F028190	MPTMASIVVKKFDGTTDITYDSLSASGGDSSPAVWRQDTGAAAGLPIGFRSLFKLWTTWNGPKTARQTKFNFVAPYAVQDSTTTLYSAKDRVVVDGIMTVPQGIPSANINEAIYQACNLLAATLIKQAAASGYAPT*
Ga0003067J53075_103256	Ga0003067J53075_1032562	F061584	AARLAVSPSKVRVIDSASRGLVTEPRWTLMKIGRSTECCERRSCRRIRLPAPTMTSLFPGSLCGLTPPPSPVPLRVRVHPLVNFASPSEHEPFRSCPARCRAWRLPWGFVPHRGISTRSPLPSELPMSRPTDPSSAFLTPSTVCSSAHLAGLFHPTTTSGIHLPGVISRCLARPPRRRPVPSCRSSARSCRRVAPTTPDRTDPPTGS*
Ga0003067J53075_103341	Ga0003067J53075_1033412	F005443	MLANTLVTNEVKNSTGAEVEFSRASTEGRTTVFKQSAETPNAPHRLKISHQESGAGTKLVRRSVVRVDKTVTGADSNPVVVTAYTVLVHPVGNLASQAEPKHVLAELMSFCASLGASTTILYDGTGNGAVCLLEGDL*
Ga0003067J53075_103822	Ga0003067J53075_1038221	F016476	RHGDRVLSWAFAPFSTSGIRGPLSREPSQPAKFRLQGLATLLTVCSLESRAGFVSHRRRSWDSPFGGFLSLQASAAFRPGRTHVPLAQRYFRRRSVRPARGASVSGFTPVGTALRPCGVLAQQPPAPPLGFAPLGLTCEDLAPDFSRTPLACLTNPGDYSPGQPTPQSVDRPSPCLARLVPKYRPAEATLMGFLHLPVPDHLSSPVPGLWNSPFVASCITADSPTIFGHRKNPAEAVQDRPWVPSIAT
Ga0003067J53075_104138	Ga0003067J53075_1041382	F005443	MLSNTLNTNEIKDSAGAEVEFSRMSQSGRATEFAKINESPVAPHRIKISHLESGAGIKKRRRSMVRVDKTVPSTLDATVMVTDSAYIIKDTPVGALSTNAEPANTLAELLSFCATTGAGTTVLFDGSGNGAKALLEGSL*
Ga0003067J53075_104509	Ga0003067J53075_1045093	F030638	MAAAAALTLKNNAAANVTYDVYSVNPDSVEWTEAGATSILGTSRFVLSRVIPADKTAGVYRTRGKLTRPVINGTSGLLDGTLTATFEILRPAKLTVAEVDEIVARFKEAVAQAIVKTAAESGAIPS*
Ga0003067J53075_104816	Ga0003067J53075_1048161	F005048	LKFEHTSPKAEDCLQDFVVETFARAKADDGLIALVVEPRHVERQGLVRTLRELGHRAIGVATALDAVQLLGREGEHVDTVFIEAESSSLPSLELVEFLAHNHPHVRRVLVGEPSEIAASWVAQATGEVHALLETPCDQEAVHRVLHRLQFTPHDGAFS*
Ga0003067J53075_106132	Ga0003067J53075_1061321	F022577	MRWLKGAVVLAALGVGIAQVASARVPAFVRQTGLVCNQCHVTWTPTPDLTFTAVKFRMNGYRTPWVAEKIEAGQEGALGGRRLLLGVTGYLSYHMRSNLFQQSKGASDPTLAEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGTPAGGQGQFIHTGVAAWVKDRVVVQLAVAPGVDNLDYKRMTYGVVLGFLPMNTDGMWLMPTFSMLAGNDMAPTAGGTPGVAALSKGGAGYTSQSMGDATRTLFDVRFGFLDHGHWSFNSATGYSWNKETYNDGAGSTLVGIGSTVRVWYDRTYGINAGLNKRLTYDFTDASGVVHPIPSDLGYNVLLVYRQAMNFAWEFGFSNNQSLRLDQNWRNGWSWNLQWHFLY*
Ga0003067J53075_106289	Ga0003067J53075_1062892	F028190	MPAMASIVVKKFDGTTDITYDSLSASGGDSSPAVWRQDTGAAAGLPIGFRSLFKLWTTWNGPKTARQTKFNFVAPYAVQDSTTTLYSAKDRVVVDGIMTVPQGIPSANINEAIYQACNLLAAALVKQAASAGYAPT*
Ga0003067J53075_109345	Ga0003067J53075_1093452	F014988	MAFAPPALITGAAVTGLTTPTYIIAVDTPPAINAKQYAVTALGGTQTGVDVNTVSKPFSISFFRPVQLRSLPAANPVTGVIKNIPMNQYKLITRKGAQPSANTPAMTARITTTIEVPAGSDTYEPEEIRALISSHFGVGFSTASGIADTVLTG
Ga0003067J53075_110098	Ga0003067J53075_1100981	F016476	LSSNLTFPLECYPATPTRPPQRPSPLMGFRSLQHLRNPRSTHRGQSQPTTFRLQGLATLLTAYSLESRAGFVSHRRRSWDSPFGGFLSREVSPAFRLRRTHLPLAQRFFRRRSVRPARRASVSGFTPPGIALRSHGVLGRQPPAPPLGFAPLGSDRENLDPDFSRPPLACLASPRDYSRNKPTPQSLYRPSPCPAQPTPKRRPAEATLMGFLHLPVPDHSSPP
Ga0003067J53075_110197	Ga0003067J53075_1101971	F008500	VSCSNCHAQGFIPVVDEVREIAIANAREIGLDRDEVEQLEGIYVSPQEFARTVQEDSQGFYQRALQLGDLPIQGGDPVSSVFLRFDQDLRIEDVAGDLGVTPDDLDDNLDLLDPVLAVLERGTVDRDDFTAVYVNSLCIMSTPLENQPDPAVCDAAEAALDL*
Ga0003067J53075_110432	Ga0003067J53075_1104321	F014210	MRWLRGAVVLAALGVGVAQVASARVPAYVRQTGLVCNQCHVTWTPTPDLTFTAVKFRMNGYRTPWVAEKIEAGQEGALGGRRLLLGVTGYLSYHMRSNLFQQSKGASDPTLPEPTAGPVTSNPFSSLAWDYTGPIAENVGIWTEWYSTNFNPVTTGAGSVGNQFGAVRNDEFDVRMGWNPGEGGNIVSVFINNQGQTSPFFGAFGSGAPAGGQGQFI
Ga0003067J53075_110850	Ga0003067J53075_1108501	F029638	VDITVTAPATTAPGSFAGSLIGQVIPATATVGTRIQCVPSNVNGFNGSTITIRKIDQFGQPLTAGFSIQQGPFWVEVARVSLGSTLASNPCATDGTQGSFNITGAGTSCANIGVITPAPFLSGLPAGQYRVVEVSGPNSYCTLVQVYNGNQAQNQSNTSAYNSGLLTQPVTLNLPDANIYDLQLTFVNSCVTPGGPSTATSQIAVVIGGSTPGLVNTSNIEIS
Ga0003067J53075_112783	Ga0003067J53075_1127833	F028190	MANMTVKKFDGTTDIVFDALSPSAGDNVPAVWRQDTGNAAGLPVGLRSMVRMTTKDNGPKTARQVKLTFDFPYAVQDSTTTLYSAKDRVHGEVMFTVPVAIPATWINEAIAQ
Ga0003067J53075_113501	Ga0003067J53075_1135011	F007739	RAAKSKIDVVRFRIIPGDWGKVRSGWLTGLLLNRAARPDSGGRIHQFL*
Ga0003067J53075_115215	Ga0003067J53075_1152151	F081396	ISGESDQAPDRRTLKIIIESDCDELGERSWAAPAVTPLVGFGERHPEEVNPRRGSDPVDG
Ga0003067J53075_118046	Ga0003067J53075_1180462	F013430	MRRCIQALVVVVVLLALGSLALAQQTPQPVVRMGNWIEVG
Ga0003067J53075_121442	Ga0003067J53075_1214422	F060956	MDNDLTYNSVVFAHSFDVEGRHVRISKARAINTPDTLTIQATDYVDSKTKVPGKRYNVRIDREDLDPESRKIISSAYLVIAVPETVADAQLDVLIATFKAAVANADLIADVLDGQL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003678: Groundwater microbial communities from S. Glens Falls, New York, USA - water-only treatment rep 1 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences