3300003603: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG

Overview

Basic Information

• IMG/M Taxon OID: 3300003603
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093347 | Ga0040887
• Sample Name: Archaeal communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter C (PS_C) MetaG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79761076
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Kryptonia → Candidatus Kryptonium → Candidatus Kryptonium thompsoni	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus caldifontis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Unclassified → Unclassified → Hot Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008426	Metagenome / Metatranscriptome	333	Y
F023604	Metagenome / Metatranscriptome	209	Y
F028182	Metagenome / Metatranscriptome	192	N
F043237	Metagenome / Metatranscriptome	156	Y
F057399	Metagenome / Metatranscriptome	136	N
F057782	Metagenome / Metatranscriptome	136	Y
F069506	Metagenome	124	N
F075398	Metagenome / Metatranscriptome	119	N
F075803	Metagenome / Metatranscriptome	118	Y
F087246	Metagenome / Metatranscriptome	110	N
F096328	Metagenome	104	Y
F102748	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26466J51736_1000080	All Organisms → cellular organisms → Bacteria	48063
JGI26466J51736_1000495	All Organisms → cellular organisms → Bacteria	18397
JGI26466J51736_1000525	All Organisms → cellular organisms → Bacteria	17630
JGI26466J51736_1000977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Roseiflexineae → Roseiflexaceae → Roseiflexus → unclassified Roseiflexus → Roseiflexus sp. RS-1	11876
JGI26466J51736_1001905	All Organisms → cellular organisms → Bacteria	7304
JGI26466J51736_1004019	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	3590
JGI26466J51736_1004131	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Kryptonia → Candidatus Kryptonium → Candidatus Kryptonium thompsoni	3489
JGI26466J51736_1004656	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	3055
JGI26466J51736_1005711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	2398
JGI26466J51736_1006730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus	1974
JGI26466J51736_1006746	All Organisms → cellular organisms → Bacteria	1971
JGI26466J51736_1006765	Not Available	1964
JGI26466J51736_1009859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Thermus → Thermus caldifontis	1247
JGI26466J51736_1013455	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	879
JGI26466J51736_1017020	Not Available	695
JGI26466J51736_1021766	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26466J51736_1000080	JGI26466J51736_100008048	F087246	MDWEIWMDETYELCKALDAIQHARQVMAFHAQGYRQVATLAGLALERIEAVRGSQNWVQLHETMQEVGALLEAILLQATERAENLQECADGYADADLERR*
JGI26466J51736_1000495	JGI26466J51736_100049525	F028182	MRYNTLVMPKVSISEAARRLDTTEEVIREWIRLGLLDVEPPPAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP*
JGI26466J51736_1000525	JGI26466J51736_100052514	F069506	MELEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGSPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA*
JGI26466J51736_1000977	JGI26466J51736_10009777	F023604	MAMDISVPKAAVKSRAVEKAXLKGMRPPAGEEDKPWQAYANETNFCKVKIDYISN*
JGI26466J51736_1001629	JGI26466J51736_10016298	F102748	MMNSLRAICCGRYNRAVGFLPKPSVLSKLAVVLLVCTLTLLCRQPTVADSASQHTQDVRVYKIRVDYTATIRYTDARGEVQEKSVQRACEFVFDTPISFEEAMSLIDGAFVTGVSSHNSLTHEVTKACSEQCRGVWCCWLGRNSKEWAWKPDGIWLASLY*
JGI26466J51736_1001905	JGI26466J51736_10019058	F008426	MSGTQYLSPLLQDPAWQALSRQLSVEARIAIFYLDELWKDERFQRDWTRLKEAYFEAQREAIAELRELFRKDFRTLTNAARKRAEALFLRGANEHASCLVRQLKEYVPDLIRDATWSYLFGRACEADREAEDEDSNRRKIYAISTENIYASRDPENFRLTEWELVRGFFSGELGELRLGIYYHDRRDRAHESFVAFSSKTPFFVPNTCAPLPSESKQDYLKRIKRDLEHELKLLAEPCSHRQPLILPRFLNKLKQLGYEFHNPRNAIPAILALAEDYYEKCDAERRNQVSNRSDATLCFYAKVVYQHKVKGLTHWKEIAGEIMPEGEDLEDWTDRVRKALPVAYELLGLPCEQKGENSENHP*
JGI26466J51736_1004019	JGI26466J51736_10040191	F057782	MVLHPPTPYTLSPLLKGGKGRGEEGSYTHVPCLFGALLGTLYHLQSKTF*
JGI26466J51736_1004131	JGI26466J51736_10041312	F075398	MLRRLESGRLTFGVSVGLLGMALMSLGYARVDKAPTFKTDPYPFVENLGQLADPEGRPLRDAYFSFEAPGMRGYVTRWG*
JGI26466J51736_1004656	JGI26466J51736_10046561	F043237	MDLEKTARYIAQLSRHGYKYAVLGELSNYNRELVKRIDLEGFVFYLCRLQTKKEVISYCLQKADKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAHTYNDKERLRAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASATEGGRGRG*
JGI26466J51736_1005711	JGI26466J51736_10057112	F096328	MTEAAYFWSKEAEKILAPYVQHLVGAESPPTISSPLLAVNWDYSFNDDLLVDLKLACKANIYGRISDKTLADIRKSLENGVLVAVLVPPRLYLLSSWDITWDGTLEALWNRPSVLLPKSVLEQVWSIYERMTN*
JGI26466J51736_1006730	JGI26466J51736_10067304	F096328	VREAAYFWSKEAEKILAPYVQALIGAKEPPTISSPLLASPWDYAFSDDLLVDLKLACKARSYGQISHSTLTDIRKSLESGVMVALFIPPRLYLLSPWDITWDGSLESLYICPSVSVPESVVQQVWSIYNRMTL*
JGI26466J51736_1006746	JGI26466J51736_10067464	F075803	MTSLKALSASPSPAFMRFRTSASEVPNATLWPFLHNLHKPPLHKKLHFRRIPKKAFAIGGFDTTSPRMTLLRSLXEIFWXQGAALERRSXPSXPKGATFLFVYSYITPHXACRFWXAAHLRLHPVLXSRVFIEPSLGEPHPYLICGSTLGTFPILNPEKEPTLPKCSFNSTPPEKNQKGYAYA*
JGI26466J51736_1006765	JGI26466J51736_10067652	F043237	MELGRTARYIAQLSGRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERAEGTFRVYCLASKPLEFPNAPLKLHYDEKTKRLRLLAQRSFINECLKVVERASSLKYPNHKLYTAKLNEALRNLYQILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKRAMLDYKNYVVKFSDFLKKKQRGPLNSSTSCPKKLKL*
JGI26466J51736_1009859	JGI26466J51736_10098592	F023604	MAMDIPVSKAAVKSRALEKAALKGMRPSAGEEEEKPWQAYAKEKNLCPVKIDYISN*
JGI26466J51736_1013455	JGI26466J51736_10134552	F057399	VADSTQRFQIMRATRMSRTFEPIATLEGYPYSYVDRDLAPNSYLYRVVRELPSGGRLESEAVEVVVHPVSETEFYVHGGSAPLGEAMLVSWIRSAAEPLTLTLYDQAGRQLYTHHTSSTEGSHLIPSPNATGIYLLEVMGGDFHRTYRLLWY*
JGI26466J51736_1017020	JGI26466J51736_10170202	F096328	IMTEAAYFWSKEAEKILAPYVQHLVGAEEPPEISSPLFAMPWDYSFNGLRVDLKLACKARSYRRISHRTLTDIRKSLESGVMVALFIPPHLYLLYPWGAIWDGSLEFLYTCPSILIPESVVQKVCEIYNRMVL*
JGI26466J51736_1021766	JGI26466J51736_10217661	F096328	TAYFWSKDAEVILAPFVQVLVGAEKPPTISSPLSAANWDYSFDDLLVDLKLACRAGIYGKISDQTLADIQASLRNGVMVALLVPPRLYLLFPYDLTWDGRLETLWNRPSVLVPKNVLEQVWDVYVKMTS*