Sample 3300003598

Basic Information
IMG/M Taxon OID	3300003598 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0067861 \| Gp0093346 \| Ga0040886
Sample Name	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003598 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0067861 | Gp0093346 | Ga0040886

Sample Name

Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	73220362
Sequencing Scaffolds	16
Novel Protein Genes	23
Associated Families	12

Dataset Contents

Total Genome Size

73220362

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
Not Available	7
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	3

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum

All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.

Ecosystem Assignment (GOLD)
Name	Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Ecosystem Assignment (GOLD)

Name

Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Type

Environmental

Taxonomy

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → hot spring → spring water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → hot spring → spring water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F043237	Metagenome / Metatranscriptome	156	Y
F063403	Metagenome / Metatranscriptome	129	N
F073601	Metagenome / Metatranscriptome	120	Y
F075483	Metagenome / Metatranscriptome	119	Y
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
JGI26465J51735_1001246	All Organisms → cellular organisms → Bacteria	9263	Open in IMG/M
JGI26465J51735_1001607	Not Available	7835	Open in IMG/M
JGI26465J51735_1001990	Not Available	6752	Open in IMG/M
JGI26465J51735_1002213	Not Available	6258	Open in IMG/M
JGI26465J51735_1002756	Not Available	5268	Open in IMG/M
JGI26465J51735_1005378	Not Available	2660	Open in IMG/M
JGI26465J51735_1006014	All Organisms → cellular organisms → Bacteria	2341	Open in IMG/M
JGI26465J51735_1006157	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	2286	Open in IMG/M
JGI26465J51735_1006756	All Organisms → cellular organisms → Bacteria	2051	Open in IMG/M
JGI26465J51735_1008647	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
JGI26465J51735_1008911	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	1485	Open in IMG/M
JGI26465J51735_1009082	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1447	Open in IMG/M
JGI26465J51735_1013318	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	911	Open in IMG/M
JGI26465J51735_1014020	Not Available	860	Open in IMG/M
JGI26465J51735_1014029	Not Available	860	Open in IMG/M
JGI26465J51735_1021713	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	549	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26465J51735_1001246	JGI26465J51735_100124610	F104114	MERLRLWLSLTQDEKFAAAERELKNAILDIHEDFEEEWSLSRSVEDFAPDGLAEIVIQTVEALLGLQWRLEWDYGADADDMVLSSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK*
JGI26465J51735_1001246	JGI26465J51735_100124614	F086364	MEREEIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDPLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQRA*
JGI26465J51735_1001607	JGI26465J51735_10016073	F084856	MMERGDAMSDLSNLMIVTHLYTKEHAEALSLTLSEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPRNCNPVRYVKSETQMDKKIR*
JGI26465J51735_1001990	JGI26465J51735_10019909	F104114	MERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG*
JGI26465J51735_1002213	JGI26465J51735_100221312	F080678	MFAKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26465J51735_1002213	JGI26465J51735_100221315	F100012	MDREKVLQALKEAQAEYDIKDLDRFVRTAWEEGDALQAQFVAEMIERAVEILFERHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVMRLVELIEQNLKSRAVE*
JGI26465J51735_1002213	JGI26465J51735_10022137	F092976	MTVQEILHWKQELRRVMQEFLQVWQKCPKCGAKWADIAWDAESDHESLLVECRSGHLFRVDEQFWLFDYDDTGVYAPSETAMAEVSAHAG*
JGI26465J51735_1002756	JGI26465J51735_100275610	F088087	MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE*
JGI26465J51735_1002756	JGI26465J51735_100275611	F080678	MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISARKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI*
JGI26465J51735_1002756	JGI26465J51735_100275613	F100012	MDKEKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVA*
JGI26465J51735_1002756	JGI26465J51735_10027567	F092976	MTVQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAESDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEEVSVHAG*
JGI26465J51735_1005378	JGI26465J51735_10053781	F084856	MERGDAMFDLSNLMIVTHLYTKEHAEALSLTLSEWRKSAPSSQIIVGYYQSRFQPSDFSNLMQDDAVQFVPVSNSSYGAAYNTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPIIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSSNCNPVRYVKPETQTDRKSSKPYGRR*
JGI26465J51735_1006014	JGI26465J51735_10060144	F086364	MEREKIIAALETAFAEISGAEYEDEPVTFAEFLESFAKFRDPDFPVYWIPYTIEEAVESLTDRKFGWHEDVLKDEWSYTGEFGFVCVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQQA*
JGI26465J51735_1006157	JGI26465J51735_10061571	F043237	MDLEKTARYIAQLSRHGYKYAVLGELSNYNRELVKRIDLEGFVFYLCRLQTKKEVISYCLQKADKPFKVYCLSSKPLEIPHMPLKLHYDEKTGRLRLLAQKSFINACLNAIEKASEVKYPSPKLYIAQVNKALRQLYSVLAHTYNDKERLRAIKRKVKHWVVEALKSQYGLKPKDAMLDYSRYVLKFSDVLRKKKSASVASAT
JGI26465J51735_1006756	JGI26465J51735_10067562	F063403	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNADPLPDLPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMPGDQ*
JGI26465J51735_1008647	JGI26465J51735_10086471	F073601	GVSLALGQAMSQAKATCLVMALPAKRREGQRMFGLLHIAWRCAVKIMECGRIIRTLPVEKKALAGMGVLLQQG*
JGI26465J51735_1008911	JGI26465J51735_10089112	F013155	MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAERLQ*
JGI26465J51735_1009082	JGI26465J51735_10090822	F013155	MELYQMAVIAIALANLAVTVWLLRLLLPVWQTLRKVVFALDHYDFDEISKKFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYKKPLDPREIQENFVRQMAEKLQ*
JGI26465J51735_1009082	JGI26465J51735_10090823	F075483	MIELLVVQTITNLALAAVVIKLRRELWPMIAGADPPGSGGVGFWIRSIDVLLVEMPLLRVAKSVTRVRWLFSEELHLTYRLRVYDVAMRPSSRVFYKEWKAWMQGDDRYKCEVEKPRGLARLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKQSK*
JGI26465J51735_1013318	JGI26465J51735_10133182	F013155	MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAEKLQ*
JGI26465J51735_1014020	JGI26465J51735_10140201	F063403	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDLQVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSADLLEQGSSGMSGDQ*
JGI26465J51735_1014029	JGI26465J51735_10140291	F063403	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ*
JGI26465J51735_1021713	JGI26465J51735_10217132	F013155	MELYQVAVIAIALANLAVTVWLLRLLIPIWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQEGFVRQMAERLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003598: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter B (PS_B) MetaG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences