3300003593: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003593
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091332 | Ga0008673
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_100m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126115718
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → Viruses → Predicted Viral	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011256	Metagenome / Metatranscriptome	293	N
F026538	Metagenome	197	Y
F029561	Metagenome / Metatranscriptome	188	Y
F034189	Metagenome / Metatranscriptome	175	Y
F039110	Metagenome / Metatranscriptome	164	Y
F041447	Metagenome / Metatranscriptome	160	Y
F046847	Metagenome / Metatranscriptome	150	N
F052275	Metagenome / Metatranscriptome	143	Y
F058538	Metagenome / Metatranscriptome	135	N
F058917	Metagenome / Metatranscriptome	134	Y
F059474	Metagenome / Metatranscriptome	134	Y
F062497	Metagenome	130	N
F066454	Metagenome / Metatranscriptome	126	N
F072236	Metagenome	121	Y
F101330	Metagenome / Metatranscriptome	102	N
F102126	Metagenome / Metatranscriptome	102	N
F105205	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26259J51720_1000125	Not Available	38029
JGI26259J51720_1002334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	5188
JGI26259J51720_1003707	All Organisms → Viruses → Predicted Viral	3693
JGI26259J51720_1007246	All Organisms → Viruses → Predicted Viral	2267
JGI26259J51720_1009110	All Organisms → cellular organisms → Bacteria	1927
JGI26259J51720_1009675	All Organisms → cellular organisms → Bacteria	1842
JGI26259J51720_1009919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1809
JGI26259J51720_1010452	All Organisms → Viruses → Predicted Viral	1741
JGI26259J51720_1010641	All Organisms → Viruses → Predicted Viral	1717
JGI26259J51720_1011057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1669
JGI26259J51720_1016512	All Organisms → Viruses → Predicted Viral	1238
JGI26259J51720_1018360	All Organisms → Viruses → Predicted Viral	1143
JGI26259J51720_1018695	Not Available	1127
JGI26259J51720_1019790	Not Available	1081
JGI26259J51720_1020848	All Organisms → Viruses → Predicted Viral	1039
JGI26259J51720_1033483	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.	730
JGI26259J51720_1035434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	700
JGI26259J51720_1035948	Not Available	693
JGI26259J51720_1049280	Not Available	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26259J51720_1000125	JGI26259J51720_100012510	F029561	MSNQVDKLTDPAFEHTSILSRGQLQMIEDDPTKMETLARLMGAVNLDNLFRHMQNPTINPATRLEFQKMLNKMGKLEPDGKDAVGANGPQVVINITRAKDKEEAITIEGSTV*
JGI26259J51720_1002334	JGI26259J51720_10023345	F011256	MKASDKTDMSLENIFGAVVLLGIGLVILLHPDKFRYSSKQIKQFIFRYWWISVFVLLGYLTMGEWSNLFIPTD*
JGI26259J51720_1003707	JGI26259J51720_10037071	F059474	MAFKAIDRSETKTVVSTDDPAIDLANSDVSAYIDSHDLKHLSFKAGEEPTTFHLGTITFMKFAEIKDKHISFDLGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26259J51720_1007246	JGI26259J51720_10072464	F046847	MPDVDKTETVNTPKTENEVVISQSKLDALIDKGFSKGAKRAKSELTEQLGVDSFEQARELILAKKEADDANKSELEKAAELISTLNSTIEGLETNNQKIQADMAIQKVVSDNGIKDADYFKHLLAQASRSEDFNQDEFITDLKGVKPYLFKGADNQPKKVDATSNRASLDVNDRIKSTKTMAELRAXXNEI*
JGI26259J51720_1009110	JGI26259J51720_10091104	F101330	NYTVSFCGFIGVCIGYFTGHQEICIMIGVGIGILIRIVQSKSK*
JGI26259J51720_1009675	JGI26259J51720_10096754	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEF
JGI26259J51720_1009919	JGI26259J51720_10099193	F041447	MVMVSKSKSKREECPAHRCKPMMLMSYLAAVFLVLGICALVK
JGI26259J51720_1010452	JGI26259J51720_10104525	F039110	MTKAASKKADAKKTSAKYQLKALRDGSHGIDGGIYTYKKYDIITLSKKGHFDSMKELACFDEV*
JGI26259J51720_1010641	JGI26259J51720_10106413	F102126	MGKKGKDIQRGQDAKRLVEDPLYKEAFEDTKNHLIEMLLQTKISEETERDRIYITIKSLGLVDEHIRSVLTTGXLAEGQDEFY*
JGI26259J51720_1011057	JGI26259J51720_10110572	F034189	MTTNLAKWASNDGQITKSGLPNDRRAKFLPSVVGFAYDLLRYEYYLGNIGSIV
JGI26259J51720_1016512	JGI26259J51720_10165123	F059474	MAFKAIDRNDTKEFVSSEDPAIDIANSDIEAYKESHNIKHLSFKDGESPTVFHMGTITFMKFAEIKDKHISFDLGSDGQEINTNLFGLTADSLRHSLKKADNLPFPIKIERGRLSDTTMDKLARLGIVEELGNIALNLNGFGDDDEKK*
JGI26259J51720_1018360	JGI26259J51720_10183603	F058917	MNKLLKALEKEGTDIRSADMVVGGKIHHVYYRVMSGQDHDNALELSKKVKTVKEADGSTTDLTYYDDGLLRAHIIYFQLLTKEGERVFNDLVKVQWIKDTITYESSSYLSALMGLKSVS
JGI26259J51720_1018695	JGI26259J51720_10186951	F072236	MDKRMKELTYMWREMNDDWYRIQTNSPTVINKLKRRKDVEICGKTTRGSRVYWLIFRIQYKKPATARDSLYRLTNCGDNITVRNGVYRAETSTYGS
JGI26259J51720_1019790	JGI26259J51720_10197902	F026538	MYKLNEDSITRLSDNASIPQAEGNRDYQQFLQDVKVNGLTIVE
JGI26259J51720_1020848	JGI26259J51720_10208481	F026538	MYKLNKDSIQRLSDNASIPQAEGNRDYQQFLQDVKVNGLTIVE
JGI26259J51720_1025362	JGI26259J51720_10253623	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLXKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTE
JGI26259J51720_1033483	JGI26259J51720_10334832	F105205	LIPHKNTGKYDLWLEHKVCRVCGSLFDLFSWNGNYLVEYWRSGK*
JGI26259J51720_1035434	JGI26259J51720_10354342	F058538	VYSQYETTVMNRRRLHHLLSWVNHELHLDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKXXXHTXN*
JGI26259J51720_1035948	JGI26259J51720_10359482	F052275	WDAPDRAPIATVDTRHCLGCKSLVEVPIEFHAGMFTEDPDVVPSFLNRCPECNSSNVQPWDAKHSCPKCGEHMTLPST*
JGI26259J51720_1049280	JGI26259J51720_10492801	F062497	KCWRNEMLKLKELITEDIDTDIKHNIDQIGVLQKEIDEIQKKLKPLKKEYGELIDNVLPILSKLGKEQMKTRNYIFKIIRKGYERQSFQYKEGFNKALGKVNNNIKKILEQILDDTKKMVDVKPKFQVSPIHEGFKEWIKSFTRKVLKKIIKPMKSIVSANKDLRKLI*