3300003590: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_200m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003590
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091324 | Ga0008665
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_200m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96786956
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011521	Metagenome / Metatranscriptome	290	N
F024324	Metagenome / Metatranscriptome	206	N
F035724	Metagenome	171	Y
F037771	Metagenome / Metatranscriptome	167	N
F043089	Metagenome / Metatranscriptome	157	N
F046847	Metagenome / Metatranscriptome	150	N
F050420	Metagenome / Metatranscriptome	145	N
F059474	Metagenome / Metatranscriptome	134	Y
F060929	Metagenome / Metatranscriptome	132	N
F061392	Metagenome / Metatranscriptome	132	N
F061863	Metagenome / Metatranscriptome	131	Y
F063398	Metagenome / Metatranscriptome	129	N
F068482	Metagenome	124	N
F078263	Metagenome / Metatranscriptome	116	N
F078821	Metagenome / Metatranscriptome	116	Y
F083345	Metagenome	113	N
F084823	Metagenome / Metatranscriptome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26251J51716_1001578	All Organisms → Viruses → environmental samples → uncultured marine virus	5305
JGI26251J51716_1004521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	2391
JGI26251J51716_1005223	All Organisms → Viruses → Predicted Viral	2156
JGI26251J51716_1008258	All Organisms → Viruses → Predicted Viral	1528
JGI26251J51716_1012041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1148
JGI26251J51716_1013173	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1073
JGI26251J51716_1013920	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1030
JGI26251J51716_1014126	All Organisms → Viruses → Predicted Viral	1018
JGI26251J51716_1014801	All Organisms → cellular organisms → Bacteria → Proteobacteria	983
JGI26251J51716_1021023	Not Available	760
JGI26251J51716_1021540	Not Available	747
JGI26251J51716_1023436	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	703
JGI26251J51716_1024173	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Scalinduaceae → Candidatus Scalindua	687
JGI26251J51716_1024468	Not Available	682
JGI26251J51716_1027658	All Organisms → cellular organisms → Bacteria	626
JGI26251J51716_1027828	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580	624
JGI26251J51716_1028806	Not Available	609
JGI26251J51716_1031653	Not Available	571
JGI26251J51716_1033995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26251J51716_1001578	JGI26251J51716_10015781	F083345	EEEYGAMFLEGIREVVSEARKGMVSDYIVLPYEDVPDEIKDKAKGNTWEVSDEDADALLQIGAVSMIKKGLKVAEEEDYYAKLQKLADTDEWESDEDKEGM*
JGI26251J51716_1004521	JGI26251J51716_10045212	F037771	VVRTSGPDLVVFDGYRGIHDGDRTAATGLEALLGCEDSTYWNNWSEHGDSLKRRFDRASAWLEVRLGXITHVNIIGFSMGCQLAVRFVHHASIRAPSIEYSQLLLIAPDPKYRPVGRDAEEIQAGTSSAFEEAGALWGGRGLAGXRFVSGLADVANRMERIRIVYCRSDGVAEWSANVELMVDELLATTGIELIEAIDGEVVSTDDMTVDLGVGNPEVDVHDRLWESVIFV*
JGI26251J51716_1005223	JGI26251J51716_10052231	F035724	PYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELHISEIFKDRMYRATFNLIQTA*
JGI26251J51716_1008258	JGI26251J51716_10082581	F084823	VKQNTLKKDDKVTNLSEYKGFQALQKSVGGLATINDEKLAIIAE
JGI26251J51716_1012041	JGI26251J51716_10120411	F060929	PAKDEYIVVRLNNVISNEVTDNLSVDIYRDEYVAALKNEIDNAYVDDLRSLADIEYNPQVIQFRN*
JGI26251J51716_1013173	JGI26251J51716_10131732	F061392	VVFKKLSIICAVFVVVIVLQLQTFASELDTPDPAFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
JGI26251J51716_1013920	JGI26251J51716_10139202	F061392	ELDTPDPTFKLAATLFPIDGGRLYVGSVDRDKKTFRLHLRHIGKDSKWVYYYANASAFVDEDGDIEPDSAVASIEYPHYTASVIGNTFRRARIRVLFSSRGDGKGFFKGAGHVIFQECSTKAFEAKDWSCTGWEYLGTLPGFQ*
JGI26251J51716_1014126	JGI26251J51716_10141261	F046847	MPDVDKTVEVETPKTENEVVLSQSKLDKLIDKGFSKGANRAKTELAEQLGVDSIEQARELINAKRENDEANKSDLDKAAELIQTLNSTIEGLESNNKNMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIDQLKG
JGI26251J51716_1014801	JGI26251J51716_10148011	F063398	LKINKTTKNEVKLVVKKEIFEIVFFGHWTKDSSNPGIEPLLNNLVDYPKIKKLTFSTKDLGDWDSFLMTQLVLIINF
JGI26251J51716_1015522	JGI26251J51716_10155221	F078263	MELLHDSDGLEGSLDCQLKRLEEKIETXQPVALMKXLHRIDDEIKHFKDVEITTNTVVSSVKEHXETIKKLEERTRDKFAEMTSQNKATEAMVTDKHN
JGI26251J51716_1021023	JGI26251J51716_10210232	F059474	PAIDLANSDIAAYIDSHDMNHLSFIDGEQPTTFHLGTITFMKFAEIKDKHISFDIGEAGQEIKTNLFGLTADSLRYSLKKADNLPFPIKVERGRLSDTTMDKLARLGIVEELGNVALSLNGFGDDEEKK*
JGI26251J51716_1021540	JGI26251J51716_10215403	F078821	MIKLKDILIEKKELGGALINKIERLTDINNHNEARLELAKQMKLTN
JGI26251J51716_1023436	JGI26251J51716_10234362	F050420	LPIYGQAEEDLKYSYEHDSIGDKYDAEGDITFRNHKDNGVVFEYAHVNINWKGGFFKSSITDDFIQKKPIQNGLVLYDITEGNQIKGYSVFARHIQIKNYPVGFETKK
JGI26251J51716_1024173	JGI26251J51716_10241731	F078263	ELLHDSDGLEGSLDCQLKRLEEKIETSQPVALMKDLHRIDDEIKHFKDVEITTNTVVSSVKEHEETIKKLEERTRDKFAEMTSQNKATEAMVADKHNDLISKINGISSRVDNLEEKIELAVRELKSEARKTSFLRKLLWLD*
JGI26251J51716_1024468	JGI26251J51716_10244682	F035724	MIFKYPTLASPTTTLTFNNNPESPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSESERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELH
JGI26251J51716_1027658	JGI26251J51716_10276582	F043089	MTRLHENYLLWLLREIQKSDSLWKDELGYLVRLIQQTKEDHL*
JGI26251J51716_1027828	JGI26251J51716_10278282	F011521	KNYPVGFETKKITVDEGRHPDFSDYDWIFKFKVASMENLKMNDQSHQAIYTKLWGSRPTSTTNCKSTQPGMNFSNSTGEIYVESWFDLKDNKLLKQVFTKXGCVPSKRLISKETWILIN*
JGI26251J51716_1028806	JGI26251J51716_10288061	F068482	MYFLVQNTLGGPINLSVWRHQKANDICRTNFMDSISQLTLDEETRNSINXLHYRDRYFLDGDIPFKDQEIKNDDIVVFTDLTDEEIIIGVIEASSDFQKERGENGR*
JGI26251J51716_1031653	JGI26251J51716_10316531	F061863	IIIYIYIIIMKIDTNLLIQTSIAACLVIFGVVTKNSFEQLGFPNHPIGKPLGMGMFIMGWIYIAYIFSINKPNKLAFILPSIGIVIAVMMMKQYMVKKQTPPMVFPVIFALSWIILGLNAGNHLSGNQKYLGLFASFLVLLSMMQILPYQRTHNIVDGPGQPLFVIAWGILIMLNSNR*
JGI26251J51716_1033995	JGI26251J51716_10339951	F024324	GHRFGWIKKAGNCDLDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*