3300003526: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_12L

Overview

Basic Information

• IMG/M Taxon OID: 3300003526
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107632 | Ga0060311
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample LVWS2_TP1_12L
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1890616
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.933251
  • Long. (^o): -130.01379
  • Alt. (m): N/A
  • Depth (m): 1542

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011936	Metagenome / Metatranscriptome	285	Y
F042865	Metagenome / Metatranscriptome	157	N
F054846	Metagenome / Metatranscriptome	139	N
F082613	Metagenome / Metatranscriptome	113	N

Associated Scaffolds

Scaffold	Taxonomy	Length
LVWS2TP112L_11138	Not Available	533
LVWS2TP112L_12029	Not Available	855
LVWS2TP112L_12292	Not Available	805
LVWS2TP112L_13687	Not Available	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
LVWS2TP112L_11138	LVWS2TP112L_111381	F042865	DFNKRIWWQFMQSVVNDLPLNGNVAPENTIRANKSCLYVESTGGTAVLWFNPNGNGSATGWIVK*
LVWS2TP112L_12029	LVWS2TP112L_120292	F054846	MSNELDLNDLGLGDNSQSAINEKMPRRGADGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDP
LVWS2TP112L_12292	LVWS2TP112L_122921	F082613	LISTVLMFALDAQLNQQSIVVAGPNATTKDAGIYATKIISVTTSASASNILIGHTNVGFAHWKVIPSRGVSSTTGASIGIDGTANITLQTTFANIADNAIFAGTFDVFSHSYLAALTASAFDTIDTREIGVRLKFNSWSSGAVRLDLSVSAKG*
LVWS2TP112L_13687	LVWS2TP112L_136871	F011936	RRKIRGVDLREQLHETRLQKLENGHDMLSRDYSRLNDAIVKISESLMALVVIQEQNKSIMQCMEHQSTTIEKLDGRIDAIELQMPQLVESRQWLMIGLGLIVTAVIVALIALVIK*