3300003518: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS861_Marker113_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003518
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111355 | Gp0107598 | Ga0060297
• Sample Name: Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample FS861_Marker113_DNA
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113071139
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Diffuse Hydrothermal Flow Volcanic Vent → Diffuse Hydrothermal Flow Volcanic Vent Microbial Communities From Axial Seamount, Northeast Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Axial seamount, northeast pacific ocean
• Coordinates
  • Lat. (^o): 45.923
  • Long. (^o): -129.988104
  • Alt. (m): N/A
  • Depth (m): 1522

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005684	Metagenome / Metatranscriptome	393	Y
F009034	Metagenome	324	Y
F015419	Metagenome / Metatranscriptome	255	Y
F015654	Metagenome / Metatranscriptome	253	N
F021319	Metagenome	219	N
F029561	Metagenome / Metatranscriptome	188	Y
F052659	Metagenome / Metatranscriptome	142	N
F057445	Metagenome / Metatranscriptome	136	N
F063768	Metagenome / Metatranscriptome	129	N
F066858	Metagenome / Metatranscriptome	126	N
F101338	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
FS861DNA_1009880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1350
FS861DNA_1021611	All Organisms → cellular organisms → Archaea → Euryarchaeota	605
FS861DNA_1049322	Not Available	1755
FS861DNA_1056106	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1420
FS861DNA_1088784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	526
FS861DNA_1097589	Not Available	565
FS861DNA_1147925	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	773
FS861DNA_1148363	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	549
FS861DNA_1162581	Not Available	528
FS861DNA_1165813	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	825

Sequences

Scaffold ID	Protein ID	Family	Sequence
FS861DNA_1009880	FS861DNA_10098803	F063768	MDLHATPDPLTIAEGVAEFVVLAELSTALSERLGEWSTDGADPDSSATMASLAARLDEHSTWWTGRIPESVLLEGERTAASGSGQLAEVLGLLDVAASDRRAAVEPVLDRLVAYLVALAERLSPLGDAPALRTIRLVLADLEDRPR*
FS861DNA_1021611	FS861DNA_10216111	F005684	VYDTEESPLSMMQAVRRKSEVREGRLCNRNEPRQAHCEPERGRFPDRGWNEHPHRSKSKQVRMASTGPGRMHS*
FS861DNA_1049322	FS861DNA_10493222	F057445	LGKGAVNEILPKAVSLILIKERLENKRKKDFLDLCDLFSVAPDVIKIM*
FS861DNA_1056106	FS861DNA_10561061	F052659	MLLNENPGTETRIAVFIDGGLISSIPELNYQTIDKLQQGGVPDKVSWMKPSLRGRLRLVKLQAQERNLTIEDLNQSIRSKWVILWAEV*
FS861DNA_1088784	FS861DNA_10887841	F029561	MSNQVDKLTDPEFAHKSILSRGQLQMIEDDPAKMETLARLMGAVNLDNLFRHMQNPSINPATRLEFQKMLNKMGKLEPDGKAVVGDGGPQVIINITRAIDNADQVVIEGTSAAIEA*
FS861DNA_1097589	FS861DNA_10975892	F015654	MKRFFKEVYIKGHGKEDKNTFDTFKETKFYKVNADRVEELKDCDNVEYITFDEIKS*
FS861DNA_1145311	FS861DNA_11453112	F066858	GTAINPSFQPRESSMRFCLAYTAVDATELLNTANKLLLTASVGENPTNVNTGTIIIPPPRPIIEPNRPATNPSGMSQILSINVLG*
FS861DNA_1147925	FS861DNA_11479253	F009034	MKTFKQLKDNKIELGGVIYRPYFIGDLPNNFGCLEYDGNDGIHEWFGYKGFCYIKDKR*
FS861DNA_1148363	FS861DNA_11483631	F015419	MEYKIKVTDENGNEYLYNVSSSSSDEPNNLNDFILRALSISEDKRKLPFLIQCPNGLEVFPSLKMKFENYGSPIFGDKIEAMMVTWRD*
FS861DNA_1162581	FS861DNA_11625811	F021319	MECIINPEKDANIKMNCEVGAARFIEIPSATTINGTKIRPLPIPNRLDIIPAKKLAPAEKTSNKCETSIGFSSIFLLRNMYDAEEIRTSANKILKISGDISEDMNAPSMVPGTAIKPSFHPSESSIRFCLAYIAVDATELLNTANRLLLTASVGENPMNVNTGTII
FS861DNA_1165813	FS861DNA_11658133	F101338	IAVLGLVARASAVYMPFFKRILCEGIISAVFLRLEIQVFVPYLTLLTLLTGVQ*