3300003516: Marine microbial communities from Antarctic ocean - Station_363 -- 0.8 um

Overview

Basic Information

• IMG/M Taxon OID: 3300003516
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0062048 | Gp0107577 | Ga0060306
• Sample Name: Marine microbial communities from Antarctic ocean - Station_363 -- 0.8 um
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77909508
• Sequencing Scaffolds: 22
• Novel Protein Genes: 22
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → unclassified viruses → Virus sp.	1
All Organisms → Viruses → environmental samples → uncultured virus	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Antarctic Lakes And Southern Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Freshwater → Marine Microbial Communities From Antarctic Lakes And Southern Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): ocean biome → marine photic zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Southern Ocean
• Coordinates
  • Lat. (^o): -60.00007
  • Long. (^o): 141.23353
  • Alt. (m): N/A
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000913	Metagenome / Metatranscriptome	838	Y
F002834	Metagenome	527	Y
F008886	Metagenome / Metatranscriptome	326	Y
F013468	Metagenome	271	Y
F022528	Metagenome	214	N
F023216	Metagenome	211	N
F023447	Metagenome / Metatranscriptome	210	Y
F041017	Metagenome / Metatranscriptome	160	Y
F043434	Metagenome / Metatranscriptome	156	N
F045769	Metagenome / Metatranscriptome	152	N
F045855	Metagenome	152	N
F050099	Metagenome / Metatranscriptome	145	N
F051467	Metagenome / Metatranscriptome	144	Y
F056737	Metagenome	137	Y
F058958	Metagenome / Metatranscriptome	134	N
F060420	Metagenome	133	N
F071644	Metagenome / Metatranscriptome	122	N
F071657	Metagenome / Metatranscriptome	122	N
F086304	Metagenome / Metatranscriptome	111	Y
F092702	Metagenome	107	Y
F101176	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Antartic2_1241872	Not Available	501
Antartic2_1243265	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	505
Antartic2_1244149	All Organisms → Viruses → unclassified viruses → Virus sp.	507
Antartic2_1245920	Not Available	513
Antartic2_1247045	Not Available	518
Antartic2_1247455	Not Available	520
Antartic2_1248083	Not Available	523
Antartic2_1250477	Not Available	543
Antartic2_1250630	Not Available	545
Antartic2_1251836	Not Available	568
Antartic2_1252432	Not Available	588
Antartic2_1252949	Not Available	609
Antartic2_1254149	Not Available	666
Antartic2_1254557	Not Available	691
Antartic2_1254578	Not Available	693
Antartic2_1254722	All Organisms → Viruses → environmental samples → uncultured virus	701
Antartic2_1255023	Not Available	720
Antartic2_1256236	Not Available	841
Antartic2_1256369	Not Available	868
Antartic2_1256661	Not Available	970
Antartic2_1256727	Not Available	1026
Antartic2_1256779	All Organisms → cellular organisms → Bacteria	1070

Sequences

Scaffold ID	Protein ID	Family	Sequence
Antartic2_1241872	Antartic2_12418721	F071657	SFTYSANDKIVCAGCGDLVTMVFDDEEKTPTYFEFLHEEEDGSFTAYHRSFDEQMDLCLSADEVH*
Antartic2_1243265	Antartic2_12432651	F092702	RYIAKMEDTIDTMWYEIEQVKETNLSLYQFIEEYGNDITGR*
Antartic2_1244149	Antartic2_12441492	F008886	AGEPFGWNGNYIMNDMVTQGAVRNRPVVTFTNGTSGTRVVDVAIFIGG*
Antartic2_1245920	Antartic2_12459201	F056737	LVLNKLNTAEAVLVIVTVIVSALPESSDTSIDFITPVVADGTVYNVVALVDVKSSFYF*
Antartic2_1247045	Antartic2_12470452	F000913	MKHWEIEHAGELIRIEWNNAATFNLQTPVGGQWVDYHCFTCYNIDSDQEALEHAFEVLGQLSPTMVSTTWWG*
Antartic2_1247455	Antartic2_12474551	F060420	TDRFQQYTKDNTRRKMIPTRITVDELDNMFQTATYVERYLPSPSMKNKRTEMFTLIDRLYGIGKDKDTYKDDTKPRLRIRLNSGQLQTYEFCILLLVKATEKG*
Antartic2_1248083	Antartic2_12480831	F058958	MAVTITTRGIVMVLRDQIIKQLGGRIFAATFTKIDGTSRQAYGQVVADDRLTDDQPNVITFIDYSIATQCFDEGKSNVRRMKLEAGTVYTIKSGKTVISNAA*
Antartic2_1250477	Antartic2_12504771	F041017	TKTNSRTRSATSSSSSPPAKRQKITVAPFAASFPRRTILSSSRWVDKVPHDIWVYKILNPFLDLKALATVGRCNTFFQEYWQYVLKQNVIRVPENCPTVHQAMDLAAVVFSERNECTRENPVKVEMGEGEHAMVGVAVGDFGLYTLVSCNNITIVGKGKGKRQFLVGFL*
Antartic2_1250630	Antartic2_12506301	F051467	MIMTVSQVNSLTDEDVEKLFNLQVYFSDEGYGAYTHFRILKDNGVSAEIMTALTVRSHSIVGFLDNGEPIHMSNLFPAHDREARDDDDFDVMINNMINDEP*
Antartic2_1251836	Antartic2_12518362	F101176	LQSIINRLPNLATITFKISDEKVFSRLVKVDGGREIVSFHFNIIEGTFDLTQILDREQLDTFNKRFMDVGIMKNKYLERSSYFYIKAQVLFDILSEMDEAQVLDAFDIITSVDP
Antartic2_1252432	Antartic2_12524321	F043434	MDFHWISWTKGEPFQWGDFRYNNGNPYKNYRIGPLLIRVFLMGLK*
Antartic2_1252949	Antartic2_12529491	F023447	METQAFMGTGELIPRLMAQVGSASFGMALAKKNGFFNPDGSMSDLGIARNGMTAEQRAIDRAGGTGVYNRYTNRVTQY*
Antartic2_1254149	Antartic2_12541492	F023216	MRIKLEYIEVQMLLAGLDAMHLPSVKHHEIKKKLHRRLERMERDYTSGYADNPVNAKIEKAVDKVDANGKIK
Antartic2_1254557	Antartic2_12545571	F050099	MGSDGFEKVLIGTLGPREKFLRGAKERAAKNSVLASGAKHTRG*
Antartic2_1254578	Antartic2_12545781	F045855	MLNKSIIDANKSVVAFVRTCLPEEGYDFIDNGGKNTLVAYYDDGHAYTPTSIRLYRRPRGDKLMSVWGLTKRAKAGDVMTFEHDKESNRIIVRLELGEPPKEIILIE*
Antartic2_1254722	Antartic2_12547221	F002834	TGTFFITYFAKKHKAFITRKGQYDKPDGTRGKSFTSKDKTPCLVYWDLDADGWRMATGNAKVRI*
Antartic2_1255023	Antartic2_12550232	F086304	MIMLKLNRVCRTTGRDNGKIILTGNTFSVYTETRRWGTTELDICVVDNGTSNNAGYWVSDSYNDIENMMIRDRS*
Antartic2_1256236	Antartic2_12562363	F045855	MKARINITQRMLNKSIIDANKSVVAFVRNCYPTLGYDFIENGGKNTLVAYYDDGHAYTPTSIRLYRRPRGDKLMSVWGLTKRAKAGDVMTFEYDKESNRIIVRLELGEPPKESI*
Antartic2_1256369	Antartic2_12563692	F013468	MSNPYTWNALKDIGLVPKETKILVGNINPHDKIKLIGVEDEVI*
Antartic2_1256661	Antartic2_12566611	F045769	AGNDALTVEAVTGVKVPGLSDVALTGIELKKGSAGDSLSAKLKFLDTTGEIDVFHPKGFEAAVFAVTIDDKLDFTKLIPGNALAGGSLLTPTMVIVPVGKTLQPNDPSIPAKLKENIAKVLADMAKSQPGVDSAPIGAGITLLAELDIQGSSDMAALNALNLPEGTTGLPLKGTISPAMFKPNASSTEKMDGTRLKLALPNLQIPALPDGTKISKALLNISDKLPEGFAPSEAPASGPVVSISASAGGDSGQNLFSFQGLSAKSMELAATYSNQAWAFGLKGTAELNDTELAYKVAFAKGADQKGEYAVKLEAAGNDALTVEA
Antartic2_1256727	Antartic2_12567272	F022528	MWVLVWMQLISGQPVDYFQLAVYESNVECEKNRKHAEIMVTHNGIAVACLEVKI*
Antartic2_1256779	Antartic2_12567791	F071644	MEKTRNPRFTGVLIFAGLWNVCLATWALFFTDIFIQVLALEGSGWAMTLGRKVFWTSVGILGIMFILSGLNNARFRFIIAIAVPGKILVFLGTAIAFLAGQAGVGIMFIGLGDLLFTIPFIMYLRATRQFGWI*