3300003487: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof

Overview

Basic Information

• IMG/M Taxon OID: 3300003487
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095091 | Ga0041912
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_1000_biof
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 216843443
• Sequencing Scaffolds: 25
• Novel Protein Genes: 25
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2
Not Available	10
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F007322	Metagenome	353	Y
F017165	Metagenome	242	Y
F026045	Metagenome	199	Y
F044211	Metagenome / Metatranscriptome	155	Y
F081545	Metagenome	114	Y
F087441	Metagenome	110	N
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26539J51216_1015806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2137
JGI26539J51216_1022222	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1454
JGI26539J51216_1024207	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1324
JGI26539J51216_1025769	Not Available	1238
JGI26539J51216_1030176	Not Available	1043
JGI26539J51216_1033248	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	948
JGI26539J51216_1035621	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	884
JGI26539J51216_1037370	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	845
JGI26539J51216_1040182	Not Available	787
JGI26539J51216_1040269	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	786
JGI26539J51216_1041905	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	756
JGI26539J51216_1043725	Not Available	725
JGI26539J51216_1045948	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	691
JGI26539J51216_1052043	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	629
JGI26539J51216_1055307	Not Available	605
JGI26539J51216_1056829	Not Available	596
JGI26539J51216_1061089	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	570
JGI26539J51216_1067239	Not Available	539
JGI26539J51216_1068110	Not Available	535
JGI26539J51216_1068437	All Organisms → cellular organisms → Bacteria	534
JGI26539J51216_1069553	Not Available	529
JGI26539J51216_1069972	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	527
JGI26539J51216_1070141	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	526
JGI26539J51216_1074603	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	506
JGI26539J51216_1075241	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26539J51216_1015806	JGI26539J51216_10158066	F044211	VTDLDAHRDNAALTEQGYTIRHIETWHRETDQTCIVWDAPELTEADLPF*
JGI26539J51216_1022222	JGI26539J51216_10222222	F087441	MEPLAVYGKSLIESNTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDRQSSFTNSIEVNQSYFTFMLDNQQTVGHRLLIFGLQQENQNNCEEYEYRVYSSGCYYLNKENQWKSDGLRVGPKTNLSQTHCYSTHLT*
JGI26539J51216_1024207	JGI26539J51216_10242071	F092364	NRINKKHSSCVVGDQCSLFTKGIGLTINDILRDKIQSNISFRKQSVLIQTAAGLTMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLTITMFTIKFWFVTLIQLHSIVRSSILRTDCVFIGPVLKLCLYLDXWLNACVAIERTVNVSKGVNFDKKKSQRAARWILLILPIFIXGTLIHEXIHHELFEYTTQKYNPIXINNNSTMNVSMENDTNVGYENEYNVLCVIRYSRSVQTYNTITLFIHLVVPFFVNLFSALFIIFGTARRRSTAKNNKKSFKEHAANQIREHKQLLISPFILLLLAVPRLIMSLISGCVDPSENPWXYLCGYLISFTPPILVFTVFVLPSELYRKTFKDSMTRWRQETHQ*
JGI26539J51216_1025769	JGI26539J51216_10257693	F017165	FDEHRGLIAFTAGHRVHVIGANQWLADTKFVWHPDRHRYAPSWMKQAVSTMTMIRSLVDECSAMSMIPNELLFEIFSHL*
JGI26539J51216_1030176	JGI26539J51216_10301762	F001866	MTFVSECLQSIVVEVGDDDSALVGDAQALRVIELAWLISFLAELEQERAIDRRQYLHSLIVTISDDDSMSIIIDRNIRWTLEISSLIILLXADREQEREIDRRQEHQSMVVGIGDDDAMMMLVDRNASRILELEVS*
JGI26539J51216_1033248	JGI26539J51216_10332481	F094111	MFLRIWIGLFIQQQYLTSATFSFNQPRFRINATWNSSATTFTNQSFAGTLPFGIFVNSNNSIYILNRLTGQIHIWLNENHLNPTKTVSGNLLEPLSLFVTTNGDIYVDNGYNNSRVDKWIRENEGWISVMNVTSYCLGLFVDIYENLYCSMVKNHR
JGI26539J51216_1035621	JGI26539J51216_10356212	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIYANSIQVNQSYFTFMIDNQQIVGHRTLIFGLEQENQNISEEYEYRVYSSGCYYLNKENQWKSDGLRVGPKTNLSQTH
JGI26539J51216_1037370	JGI26539J51216_10373701	F094111	LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKK
JGI26539J51216_1040182	JGI26539J51216_10401822	F001866	LQSKVEVVSDDDSALIIDAHSLRVKELAWLIAMRAELEQERAIDRRQYLHSIVIGISDDDSMSIIVDRNAYWTIELARSRSSLAADREQEREIDRRQEHQSMVVGIDDDDATMMLVDRNALRQVELEISCSTMADARQERLLAQ*
JGI26539J51216_1040269	JGI26539J51216_10402691	F094111	LTLSYNQPRFCLNTTWNSIATTFADQSFVGISPIGIYVNSNNSIYIPNRETGQIHIWLNENHLNPTKTIKGNLSDPLSLFVTTNGDIYVDNGINRRVDKWIVENERWISVMNVTSYCFGLFIDIYENL
JGI26539J51216_1041905	JGI26539J51216_10419052	F094111	LTLSYNQPRFCLNTXWNSKATTFANESFVGQFPSGIFVNSNNSIYIVNQQTAQIRIWQNENHLNPTKTIEGSLSDSESIFVTTNGDIYADHGMRNRRVDRWIRENETWIPILNVTSSCDGLFIDIYENLYCSMYHNHRVDKKWSNDK
JGI26539J51216_1043725	JGI26539J51216_10437252	F001866	DDDSALIVDAYSIRLVELACLIALRAELEQERAIDRRQYLHSVILCISDDDSMSIIIDRNALRIVELAWSRSLLAELEQEREIDRRQEHQSIAAAIGDDDAMMMLVDRNIVRIDEPEIS*
JGI26539J51216_1045948	JGI26539J51216_10459481	F081545	MDHQQLRSIIIKLEXRXSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTILIRAFEQIQCIDAVNLLKG*
JGI26539J51216_1052043	JGI26539J51216_10520431	F087441	MEPLAVYGRSRIETNTNLSRSLSISILDEKGNEIPFETNSDSIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDRQSSFTNSIEVNQSYFRFMIDNQQTIGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26539J51216_1055307	JGI26539J51216_10553071	F026045	MTIHEPCERVGKPLIGSNHMHLMACREGDETSMLIECNSEWLLGATSEG*DVMAFVSE*LQSVVVEVGDDNSALVGDAYSTRIVELAWLIALRAELEQERAIDRRQYLHSMVIGVRHDDSMSIIVDCNA*WIVEPAAVSFG*EQEREIDRRSGMQRIAGIDRDDALVMLVDRDILR
JGI26539J51216_1056829	JGI26539J51216_10568291	F001866	MAFVSERLQSMIEVVGDDDSALIGDAHSLRIVELAWLIASRAEHEQERAIDRRQYLHSMIAGITDDDSMSIIIDRNACWTMELARLRSLVAADLEQEREIDRRQEHQSIVVVIGDDDATMMLVDRNALRAVELEVS*
JGI26539J51216_1061089	JGI26539J51216_10610891	F094111	FLRIWIGLFIQQQYFTIAAFSFNQPRFRTNTTWSSIATTFANQNFVGTLPHGIFIDSNNSIYVPNQQTGEIHVWENENYLNPTKTISGGSLGAVSIFVTTNGDIYVDNGNNCSVDKWIAENETWIPVMNTQTQCTGLFIDIYESLYCSMPNSYRVDKRWSNGTAIIVAGTGGRGSSSNMLNIPWGIFVD
JGI26539J51216_1067239	JGI26539J51216_10672392	F001866	MALVSERLQSIVVEVDNDDSALAFDAHSLGMLELAWLIALRAELEQERAIDRRQYLHSMIAGITDDDSASIIIDRYSIREVELTRLLPILADVEQEREIDRRQEHQSVVVSIGDDDATMMLVDR
JGI26539J51216_1068110	JGI26539J51216_10681101	F026045	MEIWPPRERVGKPLIGSNHMHLTACREGDETSMLVERHCRWPLDATIERRDEMALVSE*LQSTVVAVGDDDSALVGDAQSLRKHELAGTVASTAELEQERAIDRRQYLHSMIAGVDDDDSMSIIVDHNP*SMVELARLTTLLANREQEREIDRRQEHQSMIGRVGNDDAMTMLVDCKG
JGI26539J51216_1068437	JGI26539J51216_10684371	F001866	VSTAVGDDDSALVVDAHLIRMFELVWLPAFGAELEQERAIDQRQYLHSMIARISDDDSMSIIIDRNASWTIELAGLVTMLADREQEREIDRRQEHQSMVVGIDDDDAMMMLVDRDASREVELEIS*
JGI26539J51216_1069553	JGI26539J51216_10695531	F007322	LYSMIEEINDEDAIMIVVDRKAIWMVDLAWFVAILAELGHERAAIIIITREYLHSMIAAINNKQETSMMVEHQAKRVVELAISIAFFLGADRELDSSITIKSIVFHLFLFNLSLTTTKR*
JGI26539J51216_1069972	JGI26539J51216_10699721	F094111	IYQQQYLTSTTFSFNQPRFRINATWNSSATTFANLSFVGTNPHGIFVNSNNSIYVPNRQTGQIHIWLNENHLYPTKTISGNLSDPLSLFVTTNGDIYVDNGKKGRVDKWTRENERWISVMNITLRCYGLFVDIYENLYCSMYHNYRVDKRWSNGTTIIVAGTGVQGSQSDMLDYP
JGI26539J51216_1070141	JGI26539J51216_10701411	F094111	MFFRIWIGLFIYQQQYFTIATVSFNQPRFQINATWNSRAITFANQTFVGKYPYGIFVNSNNSIYIPNQQTGQIHIWQNENDLNPTKTISGNFSYPLSLFVTTNGDIYVDNGVNHRVEKWIVENETWISVMNVPSFCSGLFIDIYESL
JGI26539J51216_1074603	JGI26539J51216_10746031	F094111	DNSPFNNFPICTFISPLLLLFLVLTLSYNQPRFGLNTTWNSSATTFTNQSFVSTNPYGIFVNSNNSIYILDINTGQIHIWLNENHLNPTKTISGNLSYPLSLFVTTNGDIYVDNGNNRPVDKWIVENERWISVMNITSRCYGLFVDIHESLYCSMQDNHRVDKKWSNG
JGI26539J51216_1075241	JGI26539J51216_10752411	F001866	LQSIVVGVGDDDSTLIIDAQSMGIVELAWLIALRAELEQERAIDRRQYLHSMIVGITDDDSMSIIVDRNAHWIVELAGSRSSLADGEQEREIDRRQEHQSIVVGIGDDDATMMLVDRNASRILELEISCTKLANARQERLLAQ*