3300003485: Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof

Overview

Basic Information

• IMG/M Taxon OID: 3300003485
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095079 | Ga0041900
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Afric - Thiocy_cont_300_biof
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 231297208
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078309	Metagenome / Metatranscriptome	116	Y
F087441	Metagenome	110	N
F094111	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26527J51213_1002905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter	9997
JGI26527J51213_1024299	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1446
JGI26527J51213_1028687	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1198
JGI26527J51213_1030217	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1125
JGI26527J51213_1033021	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta steineri	1017
JGI26527J51213_1065745	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	566
JGI26527J51213_1069425	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	548
JGI26527J51213_1077193	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26527J51213_1002905	JGI26527J51213_100290516	F078309	LPLRIELAMTLKAGFPKVRARDRSGQGRPAAVEAVSGRNILIWPVGASGLRPIPVDC*
JGI26527J51213_1024299	JGI26527J51213_10242992	F087441	MEPLAVYGKSLIETNTNLSRSLSISILDEKGNEIPFETFSNPIEFFIPRDPNLRIPPMILTNETFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSIFTNSIEVNQSYFSFMIDNQQTVGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26527J51213_1028687	JGI26527J51213_10286872	F094111	LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNSIISIESTKWNNCCRIWISKCNNQT*
JGI26527J51213_1030217	JGI26527J51213_10302171	F094111	LTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNGTTTIVAGTGVRGSESDMLTTPWGIFVDINL
JGI26527J51213_1033021	JGI26527J51213_10330211	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETNSNPIEFFIPRDPNLRIPRMILTNETFHSLNLTTDLLISIHFEIKANFSYRFVYKFDKQSTFTNSIEVNQSYFNFMIDNQQTMSH*TLIFGFKGENQEYEYRVYSSGCYYLNKENEWKGDDLRVGPKTNLSQIHCYSTHLT*
JGI26527J51213_1065745	JGI26527J51213_10657451	F094111	FKFVAKSNSPFNNFPICSFISPLLLLFLVLTLSYNQPRFCLNTIWNSIATSFADQSFLGTDPHGIFVNSNNSIYIPNRQTGQIYIWQNENHLNPTKTIIYVDNGQYNGRVDKWIVENETWISVMNATSPCFGLFIDIYENLYCSMFYNHRVDKKWSNGTTTIVAGTGVRGSESDMLTTPWGIFVDINL
JGI26527J51213_1069425	JGI26527J51213_10694251	F087441	MEPLAVYGKSLIESNTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLQILPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDKQSTFTNSIEVNQSYFSFMLDNQQTIGHRILIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26527J51213_1077193	JGI26527J51213_10771931	F094111	STDRLKQIVAIQMFLRICIGLFIYQQQYLTSSTFSFNQPRFRINATWNSIATTFADQSFVGTQSRGIFVNSNNSIYILNKNTGQIHIWLNENDLNPTKTISGSLSSPLSLFVTTNGDIYVDNGNNRRVNKWIVENERWISVMNVTSYCYGLFVDIYENLYCSMADNNRVD