3300003484: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof

Overview

Basic Information

• IMG/M Taxon OID: 3300003484
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095087 | Ga0041908
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_cont_750_biof
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 218046762
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	3
Not Available	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F011159	Metagenome / Metatranscriptome	294	Y
F044211	Metagenome / Metatranscriptome	155	Y
F078309	Metagenome / Metatranscriptome	116	Y
F087441	Metagenome	110	N
F094111	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26535J51212_1002735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Nitrobacter → Nitrobacter hamburgensis	12327
JGI26535J51212_1017162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1617
JGI26535J51212_1020875	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1297
JGI26535J51212_1022547	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1196
JGI26535J51212_1025597	Not Available	1043
JGI26535J51212_1025880	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1032
JGI26535J51212_1052259	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	568
JGI26535J51212_1054777	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	554
JGI26535J51212_1059094	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	532

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26535J51212_1002735	JGI26535J51212_100273518	F078309	LPLRIELAMTLKAGFPKVRARDRSGQGRPAAVETVSGRNILIWPVGASVLRPIPVDC*
JGI26535J51212_1017162	JGI26535J51212_10171623	F044211	MTHLDNGSVVTDLDAHRDNAALTEQGYTIRHIETWHRETDQTCIVWDAPELTEADLPF*
JGI26535J51212_1020875	JGI26535J51212_10208753	F087441	MEPLAVYGRSLIETNTNLSRSLSISILDEKGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDRQSSFTNSIEVNQSYFTFMLDNQQTVGHRLLIFGLQQENQNNCEEYEYRVYSSGCYYLNKENQWKSDGLRVGPKTNLSQTHCYSTHLT*
JGI26535J51212_1022547	JGI26535J51212_10225471	F087441	ILDEQGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISVHFEIKANFSYRFVYKFDRQTNFLNSIEVNNQNDFNFMLDNQQTVGHRLLIFGLEEENSNSSEYEYRVYSSGCYYLNKQNQWTSDGLRVGPKTNLSQTHCYSQFI*
JGI26535J51212_1025597	JGI26535J51212_10255971	F001866	MAFVSE*LQSTVVGVGDDDSALVGDAYAMRKVELAWLIATRAELEQERAIDQREYLHSMIAGIGDDDSMSIIIDRNALRIVELARPLAILPELEQEREIYR*EYLQSVVVRVEDDDAMAQRGDRHALRAVELELA
JGI26535J51212_1025880	JGI26535J51212_10258801	F094111	VRKIVRKSFHFDFVVLTLSYNQPRFCLNTFWNSNVKTFANQSFVGIVPYGIFVNSNNSIYIANRETGQIHIWLNENHHNPTKTISSRLSYPLSLFVTTNDDIYVDNGKNGRVDKLIVENETWISVMNVTSACFGLFIDIFENLYCSIRDNHRVDKKWSNGTTTIVAGTGGYGSQSDMLWSPYGIFVDINLDLFPRL*
JGI26535J51212_1052259	JGI26535J51212_10522591	F094111	GRKIVRKSFHFDFVVLTLSYNQPRFCLNTIWNSNATTFANQSFVGTRPFGIFVNSNNSIYILSRQTNQIHIWQNENHLNPTKLILDSLSSSYSIFVTTNGDIYIDNEKNGRVDKWIAENETWISVMNVTSHCDGLFIDIYENLYCSMVGNNRVDKQWSNGTITIVAGTGVEGSESXMLWSPYGIFVDIH
JGI26535J51212_1054777	JGI26535J51212_10547771	F011159	MLSDSMMNILLLTIGLLVFIQTIHSIPVQNTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAIL
JGI26535J51212_1059094	JGI26535J51212_10590941	F094111	IVMEIFMSPIEIIIEYKKCLYQRNLIVSGRKIVRKSFHFDFVVLTLSYNQPRFCLNTVWNSNATTFANRSFVRIIPHGIFVNSNNSIYIVKQQTAQIHIWQNENHHNPTKTILGNFSSPYSIFVTTNGDIYVDNGYKNGRIDKWIRENETWISVMNVTSECYDLFIDIFENLYCSMS