3300003481: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof

Overview

Basic Information

• IMG/M Taxon OID: 3300003481
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095081 | Ga0041902
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_500_biof
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175822778
• Sequencing Scaffolds: 13
• Novel Protein Genes: 16
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	6
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces massiliensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011159	Metagenome / Metatranscriptome	294	Y
F018307	Metagenome / Metatranscriptome	235	Y
F081545	Metagenome	114	Y
F087441	Metagenome	110	N
F088124	Metagenome / Metatranscriptome	109	Y
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y
F095751	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26529J51215_1004978	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	2648
JGI26529J51215_1009276	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1697
JGI26529J51215_1013599	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1366
JGI26529J51215_1015056	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1289
JGI26529J51215_1018084	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	1147
JGI26529J51215_1029149	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	843
JGI26529J51215_1029553	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	835
JGI26529J51215_1031455	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	799
JGI26529J51215_1032646	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	775
JGI26529J51215_1033023	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	767
JGI26529J51215_1054824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces massiliensis	594
JGI26529J51215_1075918	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta → Adineta ricciae	513
JGI26529J51215_1076838	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26529J51215_1004978	JGI26529J51215_10049784	F087441	MEPLAVYGKSLIETNTNLSRSLSISILDEQGNEIPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISVHFEIKANFSYRFVYKFDRQTNFLNSIEVNNQNDFNFMLDNQQTVGHRLLIFGLEEENSNSSEYEYRVYSSGCYYLNKQNQWTSDGLRVGPKTNLSQTHCYSQFI*
JGI26529J51215_1009276	JGI26529J51215_10092761	F087441	MEPLAVYGKSLIESNTNLSRSLSISILGQNGNEIPFETNSDSIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISIHFEIKANFSYRFVYKFDXQSXXXNSIXVNQSYFTFMIDNQQIVGHRTLIFGLEQENQNISEEYEYRVYSSGCYYLNKENEWKSDGLRVG
JGI26529J51215_1013599	JGI26529J51215_10135992	F081545	MDHQQLRSIIIKLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTFLIRAFEQIQCIDAVNLFDQLIITPFKN*
JGI26529J51215_1015056	JGI26529J51215_10150561	F081545	MDHQQLRSIIIKLETRLSDDDRERLHFYLGNDVPRKIRDDASLRGTLRLMDSLFDQDKINEQDFTFLIRAFEQIQCIDAVNLLKG*
JGI26529J51215_1017640	JGI26529J51215_10176402	F092364	LYTKSIGLTINDILRNHIQPNASFRKQSVLIQSAAALTMIMFVTGLINGIFSLITFQNKELRQIGCGMYLFASSITTILTITMFTVKFWFVVVTQLYATINLSILRTDCVFIGPVSKLCLYLDGWFNACIAIERTVNVAKGVHFNKQMSKRIARLIITILPIIVMCTIVHEPIHHDLFQYTTQKYKLINNNLTMNRTQENHADQSKRSVKESFEYEIEHHVLCIIRYSRTLQTYNTITLFCHLIIPFL
JGI26529J51215_1018084	JGI26529J51215_10180841	F094111	LTLSYNQPRFCLNTTWNSIATTFADQSFVGISPIGIYVNSNNSIYIPNRETGQIHIWLNENHLNPTKTIKGNLSDPLSLFVTTNGDIYVDNGINRRVDKWIVENERWISVMNVTSYCFGLFIDIYENLYCSMIYNHR
JGI26529J51215_1020930	JGI26529J51215_10209301	F092364	LLDKKQSSCVVGDQCNLHRKGIGLTINDILRNKIQRNKSLRNQSLLVQTTVGITMIMFVIGFTNGICSLITFKNKDLRKVGCGVYLLASSITSLLTITIFTIKFWFVIFIEMYSNVSSVILRTDCVFINPFLKLCLYFDGWLNGCVAIERTVNVAKGVRFDKKKSKHAAQWIIPILFILILGTIVHEPIHHDLFKYTTQKSKSINNNLTLNIAMENETNFEYEIEHNILCVTRYSQSVQTYNTITLFFHLIVPFFANLSSALFIILGTARRRSAAQKRQTFKEHVVEQIIEHKQLLLSPIILLILALPHLIISL
JGI26529J51215_1029149	JGI26529J51215_10291492	F087441	MEPLAVYGRSQIETNTNLSRSLSISILDEKGNEIPFETNSDSIEFLIPRDPNLRIPRMILTNETFHSLNLTTDLPISVHFEIKANFPYRFVYKFDKQSTFTNSIEVNQSYFRFMIDNQQTIGHRTLIFGFEGENQEYEYRVYSSGCYYLNKENEWKSDGLRVGRKTNLSQTHCYLT*
JGI26529J51215_1029553	JGI26529J51215_10295531	F094111	MFLRIWISLFIYQQQYLTSATFSFNQPRFRINATWNLIATTFANQSFVGTFPHGIFVNSNNSIYIANRQTGEIHIWLNENHLNPTKTISGNLSNPFSLFVTTNGDIYVDNGNNRRVDKWIRENERWISVMNASSYCDGLFIDIYENLYCSMYHNHRVDKKWSND
JGI26529J51215_1031455	JGI26529J51215_10314551	F094111	MFLRICIGLFIYQQQYLTSSTFSFNQPRFRINATWNSIATTFADQSFVGTQSRGIFVNSNNSIYILNKNTGQIHIWLNENDLNPTKTISGSLSSPLSLFVTTNGDIYVDNGNNRRVNKWIVENERWISVMNVTSYCYGLFVDIYENLYCSMADNNRVDKKWSNGITTIVA
JGI26529J51215_1032646	JGI26529J51215_10326461	F094111	MSTIKKSFSFEMFLRIWIGLFIQQQYFTFATLSFNQPRFRINVTWNSNATTFVNQSFVGTHPFGIFVNSNNSIYVPNRQTGQIHLWQNENHLNSTKTIKGNLSGPFSLFVTTNGDIYVDNGNDHGRVDKWIRENETWISIMNVTSRCRGLFIDIYENLYCSLWE
JGI26529J51215_1033023	JGI26529J51215_10330231	F088124	LHELIQSFATKFARMADGTSSSVTPTTPKTSVNPSLPLEYQIRPPNLPSPRESPLIGAAAHPYRARSIWYELWKSKLAIILCVTSTTLIYFDYQRTQRYKAQKALNAASETNNPT*
JGI26529J51215_1051650	JGI26529J51215_10516501	F095751	QNIVAQNLDPPSVDQHRPYIAVYVRRSDKIQLGEMYQAYPLKQYFDLFNRHARRANITTVYINSEDEQVFNEFDQINRKTQNYYKLISIQTTKNVVYRTLTNMSREQRGKIVLEFLTDLYIEANADLHAGTLTSNWCRLVDEIRLVLGKKIPYYTPENKYLMDW*
JGI26529J51215_1054824	JGI26529J51215_10548241	F018307	MQTKFVLIAALVAVLFLFHFNTVVQSTSVGESMNQWDDVSSEDLDFDKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRLASAKFASGLGKRSAE*
JGI26529J51215_1075918	JGI26529J51215_10759181	F094111	LLLLFLVLTLSYNQPRFCLNTTWNSIATTFADQSFVGISPIGIYVNSNNSIYIPNRETGQIHIWLNENHLNPTKTIKGNLSDPLSLFVTTNGDIYVDNGINRRVDKWIVENERWISVMNVTSYCFGLFIDIYENLYCSMIYNHRVDKKWSNGTTTIVAGTGVQGSESNML
JGI26529J51215_1076838	JGI26529J51215_10768381	F011159	SLMLSDSMMNILLLTIGLLVFIQTIHSIPVQNTNNDDTVAEEDSDDYSLNTHGKRTFSNSDIPDGYVGIMLGKRAATHSFRFPGEAVLLGKRRLPYEAVLLGKRDLPNEAILLGKRRIPHEAVLLGKRDLPNEAILLGKRDLPNEAILLGKRDLPNEGILLGK*