3300003472: Beaver gut microbial communities from British Columbia, Canada - Beaver Fecal Sample 1

Overview

Basic Information

• IMG/M Taxon OID: 3300003472
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111451 | Gp0104005 | Ga0059299
• Sample Name: Beaver gut microbial communities from British Columbia, Canada - Beaver Fecal Sample 1
• Sequencing Status: Permanent Draft
• Sequencing Center: Genome Quebec
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131067612
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Hespellia → Hespellia stercorisuis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Beaver Gut Microbial Communities From British Columbia, Canada
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Beaver Gut → Beaver Gut Microbial Communities From British Columbia, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal proximal gut

Location Information

• Location: Canada: Langley Township, British Columbia
• Coordinates
  • Lat. (^o): 49.01063
  • Long. (^o): -122.625468
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019676	Metagenome / Metatranscriptome	228	Y
F059106	Metagenome	134	N
F069970	Metagenome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BeaverFeces_1009059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Hespellia → Hespellia stercorisuis	3865
BeaverFeces_1029222	Not Available	1484
BeaverFeces_1056389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	986
BeaverFeces_1076094	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2299

Sequences

Scaffold ID	Protein ID	Family	Sequence
BeaverFeces_1009059	BeaverFeces_10090593	F059106	MHVIVWKIRVILLQIFAWIVDLKAREHLTGYLRKDTKYRRVTTGTHM*
BeaverFeces_1029222	BeaverFeces_10292223	F019676	MAICSLALASLLVGCDRQVSSEKSSTVGSDGTVKSKEKTVTTSPDGTVTKTEESKKTTPPEKP*
BeaverFeces_1056389	BeaverFeces_10563893	F059106	FGKIRVILLQTFVWIVDLKVRETFNRVFKERYKISRVIIGVFV*
BeaverFeces_1076094	BeaverFeces_10760942	F069970	MTTQHTAINVGDKVTFDNDKIEIFKAETSSDDMAVRQYQQLVLGGIDQVGVVKELGGNLTTVSYPDGWDLPVPTKYLIVLPSE*