3300003460: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S2-DC01B

Overview

Basic Information

• IMG/M Taxon OID: 3300003460
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111425 | Gp0104215 | Ga0059317
• Sample Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S2-DC01B
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64079668
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005815	Metagenome / Metatranscriptome	389	Y
F043408	Metagenome	156	N
F065794	Metagenome / Metatranscriptome	127	Y
F078220	Metagenome	116	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
DC01B_1169416	Not Available	548
DC01B_1213895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	530
DC01B_1416153	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	551
DC01B_1561638	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
DC01B_1169416	DC01B_11694161	F043408	RRFFANCYPSVRVISYSKYASVRIMKVRKEVSLTVETAEVANKMKNFSQWVRIGLRQYQHGEDVASETMRRMRYRKACVHLASALIDYATQIDPDYKGEVEVIIAQAMNQTTLEEFE*
DC01B_1213895	DC01B_12138952	F005815	MTMKVTRLTTYWTVDEAATVIDFLDMLRDVLWETYGEQITRMHREACDSRIQDINQCELGFDDDTPF*
DC01B_1416153	DC01B_14161531	F065794	MQDIKIYALNLLSLAVSFTHVEMVLKLILLAASIVYTAQRIWINYNEKKNK*
DC01B_1561638	DC01B_15616381	F078220	LDFDSGEDYVYNLFEAVVDVVHGKKHKKLKFAKCMKCGRYSPFRPKSNGMQFTAFYCNHCGSIVSFGARGKNPQISELAEIFCKNCEDDCRKCQINKLANEQSRGKNVKLPKKAR*