3300003451: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S6-DC05C

Overview

Basic Information

• IMG/M Taxon OID: 3300003451
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111425 | Gp0104219 | Ga0059321
• Sample Name: Marine sediment microbial communities from Douglas Channel, Canada, that are oil-degrading - Sample S6-DC05C
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39393659
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Douglas Channel, Canada, That Are Oil-Degrading

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine neritic zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Douglas Channel, British Columbia, Canada
• Coordinates
  • Lat. (^o): 53.6667
  • Long. (^o): -129.1333
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095491	Metagenome	105	Y
F099879	Metagenome / Metatranscriptome	103	N
F102144	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
DC05C_1077707	Not Available	541
DC05C_1142940	Not Available	518
DC05C_1291265	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
DC05C_1077707	DC05C_10777071	F102144	MVSLKEMWSPSRIRTEANNIEDYLFKTTKRLMRLERQYRLKKMEYLAGIEAYEERLKWLTAEME*
DC05C_1142940	DC05C_11429402	F099879	MANKEKKVEVPETIMVHCTDNGQDVEVNYISQHNGIIRTDLQGMPLYFKHHRSNIYVGNMLGREFVMKL*
DC05C_1291265	DC05C_12912651	F095491	AGALVEKLIEELEKLIEPEIKSFLADSTERVLERAAEFTIAKIDDPASIEFRATFVRFMLSQSPAFFLEAADDELIDDMGAVVEMTARHLAETPETREGNGEWIDRAMDYVAGKTLGEALEMDGSRARPPIDALADATWPAFTTVLASPQAQAWMDTLLEELIDEYERIGA*