3300003426: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan

Overview

Basic Information

• IMG/M Taxon OID: 3300003426
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095086 | Ga0041907
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_750_plan
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 231002086
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.927
  • Long. (^o): 18.452665
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001866	Metagenome	624	Y
F017253	Metagenome	242	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26534J51046_1044392	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae → unclassified Prolixibacteraceae → Prolixibacteraceae bacterium	819
JGI26534J51046_1075036	Not Available	545

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26534J51046_1044392	JGI26534J51046_10443921	F017253	FSLCRFSLTANVGSYTQGRIAGDFLSSRKAARAERCPRKTTAAALAG*
JGI26534J51046_1075036	JGI26534J51046_10750361	F001866	MAIVSECLQPIVVGVGDDDTALVGDTYSLWVVELAWLIALRAEHEQERAIDQRQYLHSAVAAVRDDDSMSIMIDRNALREAELSRLRSFLTTDLEQEREIDRRQEHQSMALGIDDDACRSQCLEAR*