3300003424: Upper troposphere microbial communities - SEAC4RS-RF10-012

Overview

Basic Information

• IMG/M Taxon OID: 3300003424
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085221 | Ga0007667
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF10-012
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2357046
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032274	Metagenome / Metatranscriptome	180	Y
F043390	Metagenome / Metatranscriptome	156	N
F054846	Metagenome / Metatranscriptome	139	N
F058997	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25856J50185_10051	Not Available	1423
JGI25856J50185_10056	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium ADurb.Bin331	1388
JGI25856J50185_10184	Not Available	765
JGI25856J50185_10289	Not Available	603

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25856J50185_10051	JGI25856J50185_100514	F043390	YQVKTEDLQKVISLTLTAEQLETIAGALELYCIGLAEHNDPHLKYAADAQDAIIDVLESIFSVEE*
JGI25856J50185_10056	JGI25856J50185_100562	F058997	MIIYKXQQMTVREAXXLMXIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG*
JGI25856J50185_10184	JGI25856J50185_101841	F032274	MQGFFDFTEQIEIXKXKRHKTLWTPKHDWRVAPKIIVTDEYIALDKKLEPIENELFDLIKQMPLAVEEKIKGKICVVNSGHTVDAELINRVRVLRKEASAIGKQLDELFFRTNKKWALFYDYTDKT*
JGI25856J50185_10289	JGI25856J50185_102891	F054846	VNDKPARRGAEGRGQGRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAXAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*