3300003423: Upper troposphere microbial communities - SEAC4RS-RF6-003

Overview

Basic Information

• IMG/M Taxon OID: 3300003423
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085223 | Ga0007669
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF6-003
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1795335
• Sequencing Scaffolds: 1
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055725	Metagenome / Metatranscriptome	138	Y
F058997	Metagenome / Metatranscriptome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25858J50188_10065	All Organisms → Viruses → Predicted Viral	1034

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25858J50188_10065	JGI25858J50188_100651	F055725	FFNGCGINLKTITELAAQGLSLNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFEVFMRHNRYGQNAFERYCWTRGL*
JGI25858J50188_10065	JGI25858J50188_100652	F058997	MIIYKDQQMTVREAXKLMGIDCDDFMAWCKKFALQNYGYALNYYKRTLKFKKG*