3300003421: Upper troposphere microbial communities - SEAC4RS-RF10-011

Overview

Basic Information

• IMG/M Taxon OID: 3300003421
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085220 | Ga0007666
• Sample Name: Upper troposphere microbial communities - SEAC4RS-RF10-011
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1979669
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: USA and various oceans
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032247	Metagenome / Metatranscriptome	180	Y
F043390	Metagenome / Metatranscriptome	156	N
F050360	Metagenome / Metatranscriptome	145	Y
F054846	Metagenome / Metatranscriptome	139	N
F055725	Metagenome / Metatranscriptome	138	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25855J50184_10037	All Organisms → Viruses → Predicted Viral	1519
JGI25855J50184_10159	Not Available	723
JGI25855J50184_10234	Not Available	615
JGI25855J50184_10241	All Organisms → cellular organisms → Bacteria	612
JGI25855J50184_10291	Not Available	562

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25855J50184_10037	JGI25855J50184_100372	F043390	MSYQVKTEDLQKVISLTLTAEQLETIAGALELYCIGLAEHNDPHLKYAADAQDAIIDVLESIFSVEE*
JGI25855J50184_10159	JGI25855J50184_101592	F050360	MQKMTNSYDNWFQDMLRDCENGLFGGDVHDESKDDVSDWTDVKTYLPEFSRMVWAAVPNVIICAHQTFLLYLDSDGQWRDNTGCLFGRRVNFWQYAEVPFFEGSC*
JGI25855J50184_10234	JGI25855J50184_102341	F054846	AEGRGQSRESRKSLSEHDTARKPERVPMYSQRTMIDTTLIPEGYHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*
JGI25855J50184_10241	JGI25855J50184_102411	F032247	ILRSNAMTIDDAIYNLEAYGRHMGNRFIAINHDRSYELLLKNAVIILEYAGMIERDTVKAWAHCNVRIINRDAERVDYTTGL*
JGI25855J50184_10291	JGI25855J50184_102911	F055725	LNSMSKMTGHSKNGIKAALERNNIPYTMGIRECFITVDGVLTSLGDACNAQGFSRESMYAWRVKRGLNEQDGFDAYIIYQQSKRTIDKPILTFKNTTVIYKKERYTLDAISDKLKLNKQRFXVFMRHNRYGQNAFERYCWTRGL*