3300003415: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof

Overview

Basic Information

• IMG/M Taxon OID: 3300003415
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095077 | Ga0041898
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_expt_300_biof
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 104989199
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F087441	Metagenome	110	N
F092364	Metagenome	107	Y
F094111	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26525J50270_1010114	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1476
JGI26525J50270_1011817	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	1267
JGI26525J50270_1015934	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Adinetida → Adinetidae → Adineta	927
JGI26525J50270_1033901	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Pontibacter → Pontibacter roseus	543

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26525J50270_1010114	JGI26525J50270_10101141	F087441	IPFETTSSNPIEFFIPRDPNLRIPPMILTNKTFHSLNLTTDLPISVHFEIKANFSYRFVYKFDRQTNFLNSIEVNNQNDFNFMLDNQQTVGHRLLIFGLEEENSNSSEYEYRVYSSGCYYLNKQNQWTSDGLRVGPKTNLSQTHCYSQFI*
JGI26525J50270_1011817	JGI26525J50270_10118172	F087441	MEPLAVYGRSLIESNTNLSRSLSISILDESGNEIPFETTSSSNPTEFFIPRDPNLQIPPMILTNKTFHSLNLTTDPPISIHFEIKANFSYRFVYKFDKQSILTNSIQVNQSYFTFMIDNQQTVGHRLLVFGLQQENQNNSEEYEYRVYSSGCYYLNKENEWKSDGLRVSPKTNLSQTHCYSTHLT*
JGI26525J50270_1015934	JGI26525J50270_10159341	F092364	TMIMFVIGFINGIFSLITFRNKELRKVGCGIYLLASSITSLLTITMFTIKFWFVILIQLHSIVRSSILRTDCVFIGPVLKLCLYLDGWLNACVAIERTVNVSKGVNFDKKKSQRAARWILLILPIFIMGTIVHEPIHHELFEYTTQKYNPIDINNNSTMNVSMENDTNVGYENEYNVLCVIRYSRSVQTYNTITLFIHLVVPFLVNLFSALFIIFGTARRRSTAKTNQKSFKEHAVNQIREHKQLLISPFILLVLALPRLIMSLVSGCVDASENPWLYLCGYLISFTPPMLVFTVFVLPSELYRKTFK
JGI26525J50270_1033901	JGI26525J50270_10339011	F094111	QQYLTSATFSFNQPRFRINATWNLIATTFANQSFVGTFPHGIFVNSNNSIYIANRQTGEIHIWLNENHLNPTKTISGNLSNPFSLFVTTNGDIYVDNGNNRRVDKWIRENERWISVMNASSYCDGLFIDIYENLYCSMYHNHRVDKKWSNDTTTIVAGTGVQGSQSDLLNYPCGMFVDIN