3300003342: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3

Overview

Basic Information

• IMG/M Taxon OID: 3300003342
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053054 | Gp0055717 | Ga0005092
• Sample Name: Soil microbial communities from Rifle, Colorado - Rifle Oxygen_injection D3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72342658
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Rifle, Colorado, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.534762
  • Long. (^o): -107.782602
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025922	Metagenome / Metatranscriptome	199	Y
F050966	Metagenome / Metatranscriptome	144	Y
F100657	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C687J50190_1004764	Not Available	2002
C687J50190_1005826	Not Available	1757
C687J50190_1011460	Not Available	1075
C687J50190_1020470	Not Available	699

Sequences

Scaffold ID	Protein ID	Family	Sequence
C687J50190_1004764	C687J50190_10047641	F050966	MSGSMWQGMKTRHGDGTEALSEEMESNGSATPKSRRHPLTLP
C687J50190_1005826	C687J50190_10058265	F100657	FKSDTYNSIIYLTYCFNSCILIYMIYFINSHKEIMIMTQITISYTTSVSTPAGWRNETVTATVEVISPKRGRVLCVQDIGGNGNSGYGSRTGAKRQAYHVGGIAMREQGKIKNLSACCIL
C687J50190_1011460	C687J50190_10114602	F025922	MARNRIIYASQSVWCNGEVLYRVQSLGSTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNDFGDVKTLATLAQVSPAKAAMSATATSTNGNLVVVSGTQLAETSTYLHGVSLADFSIVCGNLPGVTIWAPVQDECSIGTLANNIDQTLFMDEVYVNSLEFSYTTGANATENYGAETDNKMWLLNAGRFVNMDTFTFTTGSETSTTLSAGAYAVAELSSANPGFLRKDDNGSPA
C687J50190_1020470	C687J50190_10204701	F050966	MRENLMSGSRWQGMKTRHGDGTEALSEEMESNGSATPKSR