Sample 3300003290

Basic Information
IMG/M Taxon OID	3300003290 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110148 \| Gp0072754 \| Ga0007414
Sample Name	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_30 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_30 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	8126926
Sequencing Scaffolds	23
Novel Protein Genes	25
Associated Families	21

Dataset Contents

Total Genome Size

8126926

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	4

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.

Ecosystem Assignment (GOLD)
Name	Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Ecosystem Assignment (GOLD)

Name

Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → grassland area → bulk soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

grassland biome → grassland area → bulk soil

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	Hopland, California, USA
Coordinates	Lat. (^o)	38.972988	Long. (^o)	-123.116539	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Hopland, California, USA

Coordinates

Lat. (^o)

38.972988

Long. (^o)

-123.116539

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F005082	Metagenome / Metatranscriptome	412	Y
F006338	Metagenome / Metatranscriptome	375	Y
F014312	Metagenome / Metatranscriptome	264	Y
F018301	Metagenome / Metatranscriptome	235	Y
F022652	Metagenome / Metatranscriptome	213	Y
F025923	Metagenome / Metatranscriptome	199	Y
F026580	Metagenome / Metatranscriptome	197	Y
F027071	Metagenome / Metatranscriptome	195	Y
F028810	Metagenome / Metatranscriptome	190	Y
F034588	Metagenome / Metatranscriptome	174	N
F044917	Metagenome / Metatranscriptome	153	Y
F054493	Metagenome / Metatranscriptome	139	Y
F063173	Metagenome / Metatranscriptome	130	Y
F076910	Metagenome / Metatranscriptome	117	N
F081897	Metagenome / Metatranscriptome	114	Y
F082288	Metagenome / Metatranscriptome	113	N
F095010	Metatranscriptome	105	N
F096396	Metagenome / Metatranscriptome	104	Y
F098775	Metagenome / Metatranscriptome	103	Y
F100491	Metatranscriptome	102	Y
F102579	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0007414J48917_100001	Not Available	501	Open in IMG/M
Ga0007414J48917_100014	Not Available	588	Open in IMG/M
Ga0007414J48917_100019	Not Available	675	Open in IMG/M
Ga0007414J48917_100058	Not Available	973	Open in IMG/M
Ga0007414J48917_100682	Not Available	684	Open in IMG/M
Ga0007414J48917_100808	Not Available	585	Open in IMG/M
Ga0007414J48917_100955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	607	Open in IMG/M
Ga0007414J48917_101368	Not Available	524	Open in IMG/M
Ga0007414J48917_102174	Not Available	817	Open in IMG/M
Ga0007414J48917_103181	Not Available	742	Open in IMG/M
Ga0007414J48917_103551	Not Available	556	Open in IMG/M
Ga0007414J48917_104215	Not Available	955	Open in IMG/M
Ga0007414J48917_104254	Not Available	529	Open in IMG/M
Ga0007414J48917_104290	Not Available	667	Open in IMG/M
Ga0007414J48917_104367	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1380	Open in IMG/M
Ga0007414J48917_104375	Not Available	596	Open in IMG/M
Ga0007414J48917_104591	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1534	Open in IMG/M
Ga0007414J48917_105666	Not Available	894	Open in IMG/M
Ga0007414J48917_106232	Not Available	582	Open in IMG/M
Ga0007414J48917_106811	Not Available	510	Open in IMG/M
Ga0007414J48917_107039	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1075	Open in IMG/M
Ga0007414J48917_107097	Not Available	506	Open in IMG/M
Ga0007414J48917_107173	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1054	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007414J48917_100001	Ga0007414J48917_1000011	F014312	KVTAFETNKGTANGVVRLWERVKAERFALAMTPLVEAERLARKTERFSERPDKNG*
Ga0007414J48917_100014	Ga0007414J48917_1000141	F026580	ELERIAVTQRVNGCYCASARADDSGGSAHKKRGVSQMKEAERQDKVSIRTGKETRPRQGP
Ga0007414J48917_100019	Ga0007414J48917_1000191	F063173	LLFFHSSAVPFNGIAELSKGFHGSCLDRVSFPVRPLTLFRLSAFFVWLIPFLFGNARVVRHVLIHSSNRLPSGNCDSPGFETSPSYLTEFGTVSNRSSSLSPFFAFTDSARTLPEELVNS
Ga0007414J48917_100019	Ga0007414J48917_1000192	F006338	VVLENGILSGPATRPKTPLAVENSVGKLAAAEMWRQMPARERE
Ga0007414J48917_100058	Ga0007414J48917_1000581	F034588	LPRWRLHPPASPLIRTSGCPSFRISGFTGDRSSSRLDSLSFGGAGCESSRSPLRFASPVSPTISFWVAPDPHPPVPADFRSESPRSSVPSGRPLRISGLLRLFALGFVARPFPKSPWFLLAQRRRFRPPRVASKPSSSADPYLLPQVAPASASTAGSMITPWLNRTLHPWLAPWMNLRYQSGTSIPDLTSSAFSISIHCPQSADHEHKTKTVTCAFHQAGAAVPISYK
Ga0007414J48917_100398	Ga0007414J48917_1003981	F100491	AGGIKTVPSDRQAACSPTGMHGPNVASGTGETALCFPLKVLANRGSLRRCASALHSDRSPLLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSGPFGYVLPHPLCLLWLGGRDLHTNPLPNPTRLIARLRTSAPLRELSLPRDQSSQPDFELQSLPLQVARSSFAPRSAATVLWIAQRFGSSFQIRYFLPGSLSLKP
Ga0007414J48917_100682	Ga0007414J48917_1006821	F027071	LTSSCPLIKRARKKSCSNLISFYQHSRSIFAALPCGGAVSSNAIDNNIELKLTTTPLRKQLPLFVQRRHRPSMPLAPALANLRSKHKRQHGNAPSGQRINSLRNHFTGKRFASSLPLHQLSLTLRIKIIGHFNKAKLNSTDTSLLAKLCISSANALANILAIGNFTLLANHQTAVPEEISFDLLGPFNRRYCYPRSAAISASCPTNTSTPNRQGNSCKYCYLAEVIRV
Ga0007414J48917_100808	Ga0007414J48917_1008081	F028810	FQVTYPTIQLPPGMHGRSCAIRVIVRIASSAPRVVTFARLGSTRLRHASRLTPDRNPLLGTAFRSLEKTARFRATFPKSMFLAYPFGSSSSLS*
Ga0007414J48917_100955	Ga0007414J48917_1009551	F025923	SQRRGLKNATESTTGIIPGDRGKVGGSWCHPPLQTALAV*
Ga0007414J48917_101368	Ga0007414J48917_1013682	F081897	GGWEFANLSFPCRHLAPYLSMAAGFPTLFSTASGVFGLVAGPSSTLRILDFE*
Ga0007414J48917_102174	Ga0007414J48917_1021742	F098775	MVKTWKVNRRRVFTWFASRWRNHQPKRAEKPHSNSSRRKVLDGPATRPKTPLAVENSVGKLAALPLAGAKCRHGKESLANSHP
Ga0007414J48917_103181	Ga0007414J48917_1031811	F027071	PQVTTELSQAIRDLSLSSILISSCPLIKSAWKKIGSNLISFYLHTHSKIAALPCGGAVSPNAIDNNIELKLTTTSLRKQLPLFVQRCHPPSASLAPILANLRSKYKRQQSNAQSGQRINPLRNYSAGSCLAPSRPLHQSPSSLRIRITGNINKAKLNNIGTSHLAKNCAGGSITLAGSLAVSNLTLLANHQTAMPEEISFDLLGPLIRRYCYLRSAAASAGCPVNTTTPNKRANSRKYCYLAKVIR
Ga0007414J48917_103551	Ga0007414J48917_1035511	F076910	RSVQTYQVFRAQAGECRAVATVPYVPKSSRTAGPLMVSRCVSTGAPPVLGGHGDRQLAGSVHTYRVCRGTETLGPSSEVTRLRRSRNPARAILLDLANDTDEHVRPGNPAPANGSPSSNRGRLEEKPITLKARPHRSTVAPITGPRLGGRGSKEAHQKWPDLGVALRGEGSVLPNVLGAVTEQAI
Ga0007414J48917_104215	Ga0007414J48917_1042151	F018301	MGMSLKVHQSDGTDNDDQGLSARDRKQLDRLGKLWKSDAERGLKTRHLMGKVLNEQVGPPARRKAHGKRVLELYGAELEIAPSDLNRMGWFSSLFPDFSDFRTQHPEIDSWTRFKTELPNLKPAKGGKARQPVANPSNPALGGVARSFANLTSKLNGLDIRPVGAERQKLVDALRELAEAASRRLKIRVEVAVGVKESKQVVTKRSDRVARA*
Ga0007414J48917_104254	Ga0007414J48917_1042541	F022652	TTRMLSVRSAAKCALSSVCCSPLLPFSLPRVNTANAVFGYRTLPEPVSRCGLSLTRNDTFAPFRGQCSRPAPSIPRRTPSRIRSIQNSIAPFGFEADPGRYPCPKPVFRADFRRSRGFSQPPLPFRPFRALRIKAFSRLPPHEARPARPRFPFAPLRGFFRFHSGSTLAVLCVLPD
Ga0007414J48917_104290	Ga0007414J48917_1042901	F027071	ELSQAYRVSFLSSILTSSCPLIKRARKKICSNPISCYQHSHSGIAALPCGGAVSSNATDYNIELKLTTTLLRKQLPLFVQRRHLPSMPLAPVLANLRSKHKRQQGNAPSGQRFDSLRNHFTGKRFASSLPLHQLLLPLRTKITGHFNKAKLNSTDTSLLAKLCISSANALANILAISNFTLLAKHQTTVPEEISFDLLGPRLTGHIATTGLLPYQSVARSIQ
Ga0007414J48917_104367	Ga0007414J48917_1043674	F096396	MKSLISLWSRTANELAVRCRTSATRDVKTVTSRTENEGLWFLAVTLASFGKATEKWLNQGFVDPWDAPKFARTKGHLTGRPAFLQ
Ga0007414J48917_104375	Ga0007414J48917_1043751	F054493	IAASKEEATSDGEGNSGAPRARDFGREHTKRKRGGAQASIADGRQAPKKETSAGDERTS*
Ga0007414J48917_104591	Ga0007414J48917_1045911	F005082	VQVSMSNYLVFDLPKAGFTPAEANAVWQGFKTLIITSSDLMIVKLLGGES*
Ga0007414J48917_105666	Ga0007414J48917_1056662	F102579	CRFPFEGFRPNPVARVMSPPRQPPLMGLLALQSVVCSRPARESGSSHPWAFPFPVSPSVLLRLPSPTTFAVGSSSRKLSLPCRVLPNRARSVAAVRRRRLPGGFVPLRDINQRRHIWSASPTSQTVPSSAFRTPSTVSSATGLVGLFHPTATYRVRSPRVFPPMKPYRLVDGPYPRRWRLPAVRRLPVVRHEPAPRLQGFLFIGIRCDGVAV*
Ga0007414J48917_106232	Ga0007414J48917_1062321	F082288	PNNKTKNMMSFLVLSSILGIAIVSTNAILTAQTVNAQFVVKLGGPDTDQVNSRIVGTLLKPGFTNKYNLTVNGKTIPIDYSVLDGSLVGILSDPSTKSLDLAVNPQANGAALEVNVPRHVIDSKNAAGKDAPFIVKVDGNRISGEPSGICVGTCPNILNSFKETHSTNTDRVLTVLVGPESRFIEIIGNHTSA
Ga0007414J48917_106811	Ga0007414J48917_1068111	F095010	STNAFVQSILVGTRPTAAGSVRVAKGGCNSLRPDPGGRDAQTPETRGTIGSVLTKLVSPGSASSRTGPNGGRMSRNPIERRAPPQAVWSFDSHTSFVASPGGQRQGRIGEVLIRYFGRDAQGIITSRPRKCRTPTERWPPRTESETVSRFFPESGHPIGSRSGLRLLPS
Ga0007414J48917_107039	Ga0007414J48917_1070394	F096396	VRCCTSATLDIKTVERRFEHEGLSFLAITLADLGKATEKWLDRGFVVPSDVPAFKPKRLTSLPAFLSGFYGRVFDPSSGVLLDSPDIE
Ga0007414J48917_107097	Ga0007414J48917_1070971	F044917	MEAASLAGRSEPGTLIRGRHHLNMESGYGERRDIGRLAEVGFRKAEPAERFDPEGHKNPRWGVEAGKAIWKVGLKRIR*
Ga0007414J48917_107173	Ga0007414J48917_1071734	F096396	MTTGLGIATFYKGGTMKSLTSLWSCMAKELAMRCCTSATLDITTVESRFEHEGLSFLAITLADLGKVIQKWLDQGFVVPSDASSFKKNRRTGLPAFLQGFLGRVFDPSSGVLLDSPDIEAIFALRQLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003290: Grassland soil microbial communities from Hopland, California, USA - Sample H1_Bulk_30 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences