Sample 3300003284

Basic Information
IMG/M Taxon OID	3300003284 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110115 \| Gp0061288 \| Ga0006773
Sample Name	Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_16 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003284 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110115 | Gp0061288 | Ga0006773

Sample Name

Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_16 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	2241957
Sequencing Scaffolds	23
Novel Protein Genes	24
Associated Families	22

Dataset Contents

Total Genome Size

2241957

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.

Ecosystem Assignment (GOLD)
Name	Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Ecosystem Assignment (GOLD)

Name

Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → rhizosphere → soil

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	Hopland, California, USA
Coordinates	Lat. (^o)	38.97364	Long. (^o)	-123.117453	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Hopland, California, USA

Coordinates

Lat. (^o)

38.97364

Long. (^o)

-123.117453

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001380	Metagenome / Metatranscriptome	709	Y
F001418	Metagenome / Metatranscriptome	698	Y
F001633	Metagenome / Metatranscriptome	660	Y
F001758	Metagenome / Metatranscriptome	640	Y
F005082	Metagenome / Metatranscriptome	412	Y
F006338	Metagenome / Metatranscriptome	375	Y
F011845	Metagenome / Metatranscriptome	286	Y
F014631	Metagenome / Metatranscriptome	261	Y
F016001	Metagenome / Metatranscriptome	250	Y
F026580	Metagenome / Metatranscriptome	197	Y
F026808	Metagenome / Metatranscriptome	196	Y
F027071	Metagenome / Metatranscriptome	195	Y
F028810	Metagenome / Metatranscriptome	190	Y
F033437	Metagenome / Metatranscriptome	177	Y
F034588	Metagenome / Metatranscriptome	174	N
F038031	Metagenome / Metatranscriptome	166	Y
F038563	Metagenome / Metatranscriptome	165	Y
F039900	Metagenome / Metatranscriptome	162	Y
F063173	Metagenome / Metatranscriptome	130	Y
F065302	Metagenome / Metatranscriptome	127	Y
F081396	Metagenome / Metatranscriptome	114	Y
F096396	Metagenome / Metatranscriptome	104	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0006773J48901_10032	Not Available	504	Open in IMG/M
Ga0006773J48901_10048	Not Available	520	Open in IMG/M
Ga0006773J48901_10051	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	811	Open in IMG/M
Ga0006773J48901_10054	Not Available	654	Open in IMG/M
Ga0006773J48901_10086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	814	Open in IMG/M
Ga0006773J48901_10104	Not Available	601	Open in IMG/M
Ga0006773J48901_10259	Not Available	611	Open in IMG/M
Ga0006773J48901_10429	Not Available	508	Open in IMG/M
Ga0006773J48901_10564	Not Available	507	Open in IMG/M
Ga0006773J48901_10683	Not Available	843	Open in IMG/M
Ga0006773J48901_10709	Not Available	952	Open in IMG/M
Ga0006773J48901_10889	Not Available	547	Open in IMG/M
Ga0006773J48901_11075	Not Available	831	Open in IMG/M
Ga0006773J48901_11199	Not Available	560	Open in IMG/M
Ga0006773J48901_11201	Not Available	700	Open in IMG/M
Ga0006773J48901_11679	Not Available	732	Open in IMG/M
Ga0006773J48901_11723	Not Available	539	Open in IMG/M
Ga0006773J48901_12016	Not Available	740	Open in IMG/M
Ga0006773J48901_12322	Not Available	578	Open in IMG/M
Ga0006773J48901_12420	Not Available	679	Open in IMG/M
Ga0006773J48901_12554	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1476	Open in IMG/M
Ga0006773J48901_12628	Not Available	914	Open in IMG/M
Ga0006773J48901_12998	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	736	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006773J48901_10032	Ga0006773J48901_100321	F026580	IRNHSELDQVARGSFELERIAVTQRVNGCYCASARADDSGGLAQKKRVVSQTKEAERQDKVSIRTGKETRPGQGP*
Ga0006773J48901_10048	Ga0006773J48901_100481	F063173	HRSTNQVKTQLRFLFRVFTVLHRDSRRFLQRVCPVPRVWPLNSQVAFLPQFSGIFFDIAELSKGFHGSCLDRVSFPVRPLTLFHLSVFFVWLIPFFFGNARVVRRVLIHSSNRLPSGNCDSLGFETSPSYLTEFGTVSNRSSSLSPFFAFTDSARTLPEELVNSASAFRPFDP
Ga0006773J48901_10051	Ga0006773J48901_100512	F001633	GVGVRHTLFPGGTRLDALAFAGGVLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSDAPAGSGAPDVVLTRLQTNFSRRHPYHGDGASLWLAVGPALRV*
Ga0006773J48901_10054	Ga0006773J48901_100541	F001418	LKAEAEFTSSSGSVRALSVNAKKGLRDEERLETVPNSVK*
Ga0006773J48901_10086	Ga0006773J48901_100861	F033437	LGLGVRHALFPDRTRLGALAFAGCVLPDATLRGMRMFRSHGGTVLTVAGRDLLSEVFAPSSVAPCRERHAGRGADTSAILLRVGTVTAGTAPAFGWSLALRYGSDLLTLRLLSLLQCGGVVFTLPH*
Ga0006773J48901_10104	Ga0006773J48901_101041	F014631	VPSDPLDCSLSDRHARPELGIRIGSDVGPLLPAAGLIQPRIVALVLVRSPFR*
Ga0006773J48901_10259	Ga0006773J48901_102591	F034588	PSFRISGFTGDRSSSRLDSLSFGGAGCESSRLPLRFTSPVSPTISIRVAPDAHPPVPADFRSESPRSSVPSGCPHRISGLLRRLALSFVARPFPKSPWFLLAQRRRFRPPRVASKPSSSADPYLLPQVAPASASTAGSMITPWLNRTLHPRLAPWMNLRYQSGTSIPYLTSSALLISIHCPQSADHEL*
Ga0006773J48901_10429	Ga0006773J48901_104291	F065302	VQGSRYDSATRLHADVRFAARCSGIACHSPSPLFSMRVTVASALNGHNTLPEPESRYGLSLAHNDAFATIARSTFLACTFVSPSDTFANPFDSRLLRSVRFRGRTGALSMPGTRFPRRSPTFPIDPRSPLPFRSSCENPPDQSVQPVPFQEARLA*RSIASYSPPLP
Ga0006773J48901_10564	Ga0006773J48901_105641	F001758	QAGWLNSSESGSKDLKGEAEFTSSSGGVRAPSVNAKKGLRSKERLETVPNSVK*
Ga0006773J48901_10683	Ga0006773J48901_106832	F006338	VVPQNGMLGGPATRPKTPLAVENSVGKLAAPETGRQMPAREREHGELPSPI*
Ga0006773J48901_10709	Ga0006773J48901_107091	F016001	VFSRRFDPIPSWACLLQVFALDALEAPSRLLTPVVLMATLSVIVSIDLQRSDTELGVSLETAYLLEVSYLPAMLSCPNISDEVRRSASPVARFRLFLP
Ga0006773J48901_10889	Ga0006773J48901_108891	F028810	TYPTIQLPPGMHGRSCAIWVMVRIASCAPRVVTFARLGSTPLRHASRLTPDRNPLLGTAFRSLEKTARFRATFPKSMFLAYPFGSSSSLS*
Ga0006773J48901_11075	Ga0006773J48901_110751	F081396	LFSGESDQAPDRRTLKIIIESDCDELGERSWAAPAVTLLVGFGEKNPEEEKPRRGSDPVGG*
Ga0006773J48901_11199	Ga0006773J48901_111991	F038563	HPSRFTEHHNRSFKLSVLDKNYIGVMARNRNRRRNKGTGQGVLPGPSAFVSPVQGKDGETLYVQVKKPVGVPAYLTPTHFSVTLKGAPGQMLLHGSRCAGTWTTGKVPVDDWKDIQIQVSADEMLAQTTTFWYKSQ*
Ga0006773J48901_11201	Ga0006773J48901_112011	F006338	LSGPATRPKTPLAVENSVGKLAAPEMRRLMSAWEREIGELPS
Ga0006773J48901_11679	Ga0006773J48901_116791	F026808	MANRKKSGGRRQSAPRASTPKFVFEPGEQRLRLDDLFTAVTLGSDEVEGTVAPGNLVFPPSSARVLGWVLTVTSVHGEVQFRTGVGHSKTARVVVPCPFPRPASVSAPIVSLVGPEASTFGVFTSVTVIFKPQ*
Ga0006773J48901_11723	Ga0006773J48901_117231	F001380	PGFTVRFSDPPACRRSLRGNVLRMIRLPLAIAAFQPATGHCNLRPQRTHTLPEPESRYGLSLAHNDAFATIARSMFLACTFVSTSETFANPFDSRLLRSVRFRGRTGALSMPGTRFPRRSPTLLNLLRFPLPFGSSFENPPDQSVQPVTVSGNPSRLTPDRFWFPEKLASSGLTHRSVN
Ga0006773J48901_12016	Ga0006773J48901_120161	F027071	PQVTTELSQAIRDLSLSSILISSCPLIKSAWKKIGSNLISFYLHTHSKIAALPCGGAVSPNAIDNNIELKLTTTSLRKQLPLFVQRRHLPSASLAPILANLRSKYKRQQSNAPSGQRINSLRNYSAGSCLTPSRPLHQSPSSLRIKITGNINRAKLNNIGTSLLAKNCAGGSITLAGSLAVSNLTLLANHQTAMPEKISFDLLGPLIRRYCYLRSAAASAGCPVNTTTPNKRANSRKYCYLAKVIR
Ga0006773J48901_12322	Ga0006773J48901_123221	F011845	PGFTVRFSDPSACGRSLCGRVPRINHLSLAITAFQHATGHSNKRVLSGHSHPAGAENSIRPFARSQRRFRHHCEVNVPGLHLRLHIRNPREPVRFPAPPLRSVSRPNRGDINARHPFSAPISNIPDLSPGLHSPSGPRGRPSGSKRSTGPISGSPSHRTLDRSSLPAALTSRPGCGSMLETRFVPLNYRSVN
Ga0006773J48901_12420	Ga0006773J48901_124201	F081396	KWIAGKERGLVAGSQGSEAGTEPRAGRSISGESDQAPDRRTLKIIIESDCDELGERSWAAPAVTLLAGFGEKNLEEENPRRGSDPAGG*
Ga0006773J48901_12554	Ga0006773J48901_125541	F005082	LRIDANKVTPDPFRPSENVKVSMSNYIVFDLPPAGYTGAEAQAVYAGFKALFTATSDQMIVKLLGGES*
Ga0006773J48901_12628	Ga0006773J48901_126281	F039900	LRNGSSWFRPDEGSQSKDRGPLLGQTHYSSTEKRGGVSGMEQFLSEKDQEVWKYVLSDYRTESERDSEADIPVPDRLLPKRRSQELVRMLKLSQMIGLLLWLNRSELITLGGRERLLYLQAKASFEAIEAGLRFARRLSQEEKLRSDFRHQMRELNRRPQSKHFRQSEARRIGVGYRDKGMLPGSSTGARTRAQKDAYIPSHLVPKILRDALQLVTPACLTADEEWVDLSMVAGSFGTQADIGARPLLPPL*
Ga0006773J48901_12998	Ga0006773J48901_129981	F096396	MKSLTSLWSCIAQEMAMRCCTSATLDIKTVESRVEHEGLSFLAITLADYGKAIQKWLDQGHVAPWDAPGFKKAPGRLTGLPAFLQGFLGRVFDPSS
Ga0006773J48901_13271	Ga0006773J48901_132711	F038031	EFEIIISNNLRQARDGIANASIKLVRRLPDPTPSNVFDNYRDIRNLFGFTYSFDAQTRAEASVDVPRLRTALLALVDSTLQGRIIAGEK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003284: Avena fatua rhizosphere microbial communities - H3_Bulk_Litter_16 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences