3300003266: Human fecal microbial communities from Spain - Individuo 1

Overview

Basic Information

• IMG/M Taxon OID: 3300003266
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111431 | Gp0103192 | Ga0057482
• Sample Name: Human fecal microbial communities from Spain - Individuo 1
• Sequencing Status: Permanent Draft
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 37999277
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Fecal Microbial Communities From Spain
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F062845	Metagenome	130	N
F078693	Metagenome	116	N
F087335	Metagenome	110	N
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
BAAUDRAFT_1000940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3254
BAAUDRAFT_1002912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2251
BAAUDRAFT_1010172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1226
BAAUDRAFT_1018850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → unclassified Faecalibacterium → Faecalibacterium sp. Marseille-P9312	538
BAAUDRAFT_1023477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	1007

Sequences

Scaffold ID	Protein ID	Family	Sequence
BAAUDRAFT_1000940	BAAUDRAFT_10009403	F078693	MVFAPMRGAERFFIKADCSLLMSKENQKSTSDFDALDPRERGYSPLSDPEGVVEAQKC*
BAAUDRAFT_1002912	BAAUDRAFT_10029123	F047125	MDVVLLLMVLGVMLSGFWAADALDHMRKEIIRQEGKRRGWWS*
BAAUDRAFT_1010172	BAAUDRAFT_10101722	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTALSKSCA*
BAAUDRAFT_1015627	BAAUDRAFT_10156271	F101356	GFGDVGELMPVVTPEKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPSSDFCVYIAGNTMELQDTTKVYVKYLYGQPNSDTYLKMKYESDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIVQ*
BAAUDRAFT_1018850	BAAUDRAFT_10188501	F062845	MKKTPFILHEKFRSENNEQRKERFQKEFERYIIDGLLNAVPSRSCA*
BAAUDRAFT_1023477	BAAUDRAFT_10234772	F087335	MLELYFNDGNFLPESREEEQSAETVLNIMLAGKTTDTEMCIWPCFYHAPMCKGVLINLDDGTTLRIKPFLNKEGEPELLIGCVTEETVGEVYQWVSNYD*