3300003243: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D

Overview

Basic Information

• IMG/M Taxon OID: 3300003243
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0091525 | Ga0008841
• Sample Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-BECK01-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 373602
• Sequencing Scaffolds: 1
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → agricultural soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Wisconsin, United States
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007280	Metagenome / Metatranscriptome	354	Y
F018585	Metagenome / Metatranscriptome	234	Y
F095664	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26284J46829_10035	Not Available	589

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26284J46829_10002	JGI26284J46829_100022	F095664	MPFDRRHVLAQWGGTLPGGEIWSNSLRLASTDTGPDADVPDHDAMVEWLTTYAKDAVAAWHGSFDLKCSNQAKLAYLKMNVVDIAGRYIEQNTLEYLYSPVVPGGSASNIHPTQIALAVSLTTEFSRGHAHRGRFYVPMPVHVVDATTGLISVSDAIQVATAAKTFIEALADEPGPDILPGMRVCVMSQRGTGATNVVTGVDVGRVLDTQQRRRNALKETYQHVTVDQGAS*
JGI26284J46829_10035	JGI26284J46829_100351	F018585	MAVPTLRRLVSSRGLPGRGLDLETLAQLHTTLVDERQQLRQDGAPVEELERNRLAIVQCQWELSQALIERYLPPAAAPSAA*
JGI26284J46829_10052	JGI26284J46829_100521	F007280	PLVVDYPARLPQQFGDLAIAVAAVLPGKLDNIGRETLLVVTTARDLALCRAMLPERRTGATLGDMQLRSDLLNAGAATRGA*