3300003217: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D

Overview

Basic Information

• IMG/M Taxon OID: 3300003217
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088366 | Ga0008107
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-6-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 165828723
• Sequencing Scaffolds: 23
• Novel Protein Genes: 28
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	23

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26054J46599_1021028	Not Available	1148
JGI26054J46599_1021332	Not Available	1137
JGI26054J46599_1021573	Not Available	1127
JGI26054J46599_1022090	Not Available	1109
JGI26054J46599_1024599	Not Available	1028
JGI26054J46599_1026214	Not Available	981
JGI26054J46599_1034200	Not Available	818
JGI26054J46599_1035101	Not Available	803
JGI26054J46599_1036756	Not Available	778
JGI26054J46599_1037883	Not Available	763
JGI26054J46599_1042526	Not Available	708
JGI26054J46599_1047509	Not Available	659
JGI26054J46599_1056808	Not Available	590
JGI26054J46599_1059751	Not Available	572
JGI26054J46599_1060000	Not Available	570
JGI26054J46599_1061811	Not Available	560
JGI26054J46599_1061865	Not Available	560
JGI26054J46599_1062746	Not Available	555
JGI26054J46599_1064141	Not Available	548
JGI26054J46599_1064936	Not Available	543
JGI26054J46599_1065462	Not Available	541
JGI26054J46599_1066859	Not Available	534
JGI26054J46599_1067566	Not Available	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26054J46599_1021028	JGI26054J46599_10210281	F010514	KRDEIGRKREIKILVRNSVCTRPGQENFEKNSKTIQKIIKPLPGIISSQNGMR*
JGI26054J46599_1021332	JGI26054J46599_10213321	F010514	ILVPNSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ*
JGI26054J46599_1021573	JGI26054J46599_10215732	F010514	ENKILVPNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME*
JGI26054J46599_1022090	JGI26054J46599_10220902	F010514	MVGRKSEYKILVPNFVHTRTEQENSEKNIKKIQKIIKPLPRIIFSQNGMRLADKVNTKF*
JGI26054J46599_1024599	JGI26054J46599_10245991	F010514	QKRDEIGRKRENKILVPNSVHNRPRQENSEKNSYKIQKIIKPLPGIIFSENGMR*
JGI26054J46599_1026214	JGI26054J46599_10262142	F010514	VIGRKRENKILVPNSVHTRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMRLADKVTTKF*
JGI26054J46599_1030094	JGI26054J46599_10300941	F010514	NLFPALFLAKRDEISRKSENKILLQNSVHTRPGQENSEKNSKKIQKIIKPLPGITFSQNGTR*
JGI26054J46599_1034200	JGI26054J46599_10342001	F010514	VKKKILVPNSVHTRLGQENSEKNSKKIQKIIKPIPDIIFTQNWKI*
JGI26054J46599_1035101	JGI26054J46599_10351011	F010514	EIGRKRENKILVPNSIHTRPGKENFEKNSKIIKKIIKTIPGIISSKNGMR*
JGI26054J46599_1036756	JGI26054J46599_10367561	F038929	MTIRARIGRKIGNKNNFLPNRSNPARVRKFENKCKKILKIKKHHPGFITRRNGS
JGI26054J46599_1037869	JGI26054J46599_10378692	F010514	DEIGRNREKKILVPNSVHTRPGQENSEKYSKKIKKIIKHLFGHSFTKNGMR*
JGI26054J46599_1037883	JGI26054J46599_10378831	F010514	FVPNSVHTRPGQENSEKYSKKIQKIIKPLFGIIFSKNGMR*
JGI26054J46599_1039040	JGI26054J46599_10390402	F010514	RESEKKKKNLVPNSVHTRPGQENSEKNSKKFQKINKPLSGINFSQNGMR*
JGI26054J46599_1042526	JGI26054J46599_10425262	F010514	DITGREGQKSENKILPQNSVHTRPEQENSEKNSEKIQKIIKPIAGIIFSENGMR*
JGI26054J46599_1047509	JGI26054J46599_10475091	F010514	DEIGRKRENKILVPNSIHTRPGKENSEKNSKIIPKIIKPIPGIISS*
JGI26054J46599_1055109	JGI26054J46599_10551091	F010514	LVPNSVHTRPGQENFEKXSKKIQKIIKPIPGIIFSPNGKI*
JGI26054J46599_1056808	JGI26054J46599_10568081	F010514	ENKIFVPNSVHTRPGKQNSEKTSKKIQKIIKPIPGIIFSQNGTR*
JGI26054J46599_1059751	JGI26054J46599_10597511	F010514	KILVPNSVHTRPGQENCEKNSKKVQKIIKPLPGNIFSENGMRYAEKEKTKF*
JGI26054J46599_1060000	JGI26054J46599_10600001	F038929	SRLHYKMKRVRTGRKIVNKKNFIPIRSIPTRVRKFKNKCKKILKIKKPHPDFISRRNGSGQAEK*
JGI26054J46599_1061811	JGI26054J46599_10618111	F010514	KRDEIGRQSEHKILVPNSVHTRPGKENSEKNCKKIQKIIKPLPAIIFSQNGTR*
JGI26054J46599_1061865	JGI26054J46599_10618651	F010514	LPKLDEIGQNKENKILALNSVHTRPGQENSEKNSKQIQKIIKPLPGIIFSQNGMR*
JGI26054J46599_1062746	JGI26054J46599_10627461	F010514	MRWGRKKENKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPDIIF*
JGI26054J46599_1064141	JGI26054J46599_10641411	F010514	SRKSENKILLQNSVHTRPWQENSEKNSKKIQKIIKPIPGIFSRHNGTR*
JGI26054J46599_1064936	JGI26054J46599_10649361	F010514	IGQKSGNKILVPNSVLTRPGQENSEKNLKKIQKVIKPIPGIISSQNGII*
JGI26054J46599_1065462	JGI26054J46599_10654622	F038929	MLRLRKGRKIENKKNFIPIRSNPTRVRKFKNKCKKILKITKHHPGFISRR
JGI26054J46599_1066859	JGI26054J46599_10668591	F010514	KSENKILLQNSVHTRRGQKNSEKNSKKIQKIIKPLPGIIFSENGTR*
JGI26054J46599_1067566	JGI26054J46599_10675662	F010514	MKYAKKKENKILVLNSVHARPGQENSEKNSKKIQKIIKPLPGIIYSQNEMR*
JGI26054J46599_1074093	JGI26054J46599_10740931	F010514	RDEIGRNREKKNLVPNSVQTRPGQENSEKYSKKFQKIIKPLPCIFFSQNSMR*