3300003214: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL

Overview

Basic Information

• IMG/M Taxon OID: 3300003214
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053073 | Gp0061152 | Ga0007032
• Sample Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 183666840
• Sequencing Scaffolds: 2
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016724	Metagenome / Metatranscriptome	245	Y
F039839	Metagenome / Metatranscriptome	163	Y
F059118	Metagenome	134	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25165J46597_1000023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	338873
JGI25165J46597_1031803	Not Available	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25165J46597_1000023	JGI25165J46597_100002332	F059118	MMGGILDNPPVHDPLVPPMRVTTSFTCHGTARTITVARGIGRDAVVALTTNGKPVVGAAMTTIRSGLAPLTAIDEVTPYCGDGPDRIRIKGWIDDRKRNLMIFFGPAGEAAVRDVG*
JGI25165J46597_1031803	JGI25165J46597_10318031	F039839	MIALTRGENFARRIIPVGSRPALRRETRFGLPLTPESGGPSRHRAAQFAPAMI
JGI25165J46597_1036499	JGI25165J46597_10364991	F016724	MRAKQSILGLVYPGGEVRRPPLVGMQFLHERTVGASNLVAPRARLQAKDLIGLLFRHFSARR