Sample 3300003143

Basic Information
IMG/M Taxon OID	3300003143 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111471 \| Gp0097591 \| Ga0052245
Sample Name	Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf
Sequencing Status	Permanent Draft
Sequencing Center	Japan Agency for Marine-Earth Science and Technology
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003143 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111471 | Gp0097591 | Ga0052245

Sample Name

Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf

Sequencing Status

Permanent Draft

Sequencing Center

Japan Agency for Marine-Earth Science and Technology

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	36847613
Sequencing Scaffolds	30
Novel Protein Genes	30
Associated Families	16

Dataset Contents

Total Genome Size

36847613

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	28
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium Ae_b3b	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium Ae_b3b

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

Ecosystem Assignment (GOLD)
Name	Marine Sediment Microbial Communities From Deep Subseafloor
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Ecosystem Assignment (GOLD)

Name

Marine Sediment Microbial Communities From Deep Subseafloor

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → oceanic subsurface zone → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine benthic biome → oceanic subsurface zone → marine sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Northwestern Pacific Ocean
Coordinates	Lat. (^o)	41.1773	Long. (^o)	142.2013	Alt. (m)	N/A	Depth (m)	1180.5
Location on Map

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Location Information

Location

Northwestern Pacific Ocean

Coordinates

Lat. (^o)

41.1773

Long. (^o)

142.2013

Alt. (m)

N/A

Depth (m)

1180.5

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F008850	Metagenome	327	Y
F020845	Metagenome	221	Y
F041583	Metagenome	159	Y
F044219	Metagenome	155	Y
F046170	Metagenome / Metatranscriptome	151	Y
F056273	Metagenome	137	Y
F074370	Metagenome / Metatranscriptome	119	Y
F075650	Metagenome	118	Y
F076639	Metagenome	118	Y
F078009	Metagenome	117	Y
F083668	Metagenome / Metatranscriptome	112	Y
F085104	Metagenome	111	Y
F089412	Metagenome	109	Y
F091296	Metagenome / Metatranscriptome	107	Y
F098316	Metagenome	104	Y
F100280	Metagenome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0052245_1000096	Not Available	3341	Open in IMG/M
Ga0052245_1000121	Not Available	3146	Open in IMG/M
Ga0052245_1000910	Not Available	1776	Open in IMG/M
Ga0052245_1001773	Not Available	1440	Open in IMG/M
Ga0052245_1001819	Not Available	1430	Open in IMG/M
Ga0052245_1002711	Not Available	1228	Open in IMG/M
Ga0052245_1003327	Not Available	1083	Open in IMG/M
Ga0052245_1004165	Not Available	892	Open in IMG/M
Ga0052245_1006697	Not Available	1343	Open in IMG/M
Ga0052245_1007384	Not Available	1209	Open in IMG/M
Ga0052245_1008173	Not Available	1094	Open in IMG/M
Ga0052245_1009247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium Ae_b3b	956	Open in IMG/M
Ga0052245_1012050	Not Available	668	Open in IMG/M
Ga0052245_1012686	Not Available	578	Open in IMG/M
Ga0052245_1016800	Not Available	859	Open in IMG/M
Ga0052245_1018842	Not Available	837	Open in IMG/M
Ga0052245_1020956	Not Available	822	Open in IMG/M
Ga0052245_1021509	Not Available	818	Open in IMG/M
Ga0052245_1022186	Not Available	814	Open in IMG/M
Ga0052245_1023252	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	808	Open in IMG/M
Ga0052245_1023378	Not Available	808	Open in IMG/M
Ga0052245_1023425	Not Available	807	Open in IMG/M
Ga0052245_1029767	Not Available	772	Open in IMG/M
Ga0052245_1030499	Not Available	767	Open in IMG/M
Ga0052245_1031091	Not Available	763	Open in IMG/M
Ga0052245_1034861	Not Available	721	Open in IMG/M
Ga0052245_1035101	Not Available	717	Open in IMG/M
Ga0052245_1037019	Not Available	670	Open in IMG/M
Ga0052245_1037595	Not Available	649	Open in IMG/M
Ga0052245_1038092	Not Available	628	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052245_1000096	Ga0052245_10000964	F083668	MSWTPDKICAVILIVGCLLLVAFRIDGEVKSILTISAGYLFGTGIMEYRTKKKGK*
Ga0052245_1000121	Ga0052245_10001214	F008850	MAISKRAKARLKIMTAGEKAAVKKATKLLYNSELLGVKRMREILRFADKC*
Ga0052245_1000910	Ga0052245_10009105	F089412	SGVGFVRSADSTIPANVDYISLISTNNFFVQLQGTGNATAKDVAGRVWGYRARADAATYAALVQSEVLSA*
Ga0052245_1001773	Ga0052245_10017731	F020845	MNKTKQTEQKEIGRVKLGDTQDLVVSIVDDEKVDLRIFLNTDSYKGPTKRGVRFYMFDDNWLEFMKLMEKVDRKYQELT*
Ga0052245_1001819	Ga0052245_10018192	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASLIDKEKLDLRIFIKTDSYTGATKRGIRFYLFDNNWIEFKKLINK
Ga0052245_1002711	Ga0052245_10027111	F083668	MKWTPDKVTALILVVGCLVLIFTGRDSEVKSILTVAAGWLFGASYVDIKRGGKK*
Ga0052245_1003327	Ga0052245_10033272	F008850	MALSKRARARLKIMSASEKAAVKKSAKLLFDSELMGVKRMREIVRWAEKR*
Ga0052245_1004165	Ga0052245_10041651	F100280	KSFAEQLISLKTEYFNSGNDNFQEIYGSGAIFGIGGRFEGDSGIFWGLELEYFSRKGEPLDYPARKSKKGLLVEGPDLTNMTGVEWNMDKTSTRLTIISVLSTIIYKPLKGSPISPNLTVKTGFTGTKEKFSGEYEYEGSDGWEEFKDDKSAFGFLVGGSGGIEFFSGPFRIFLFCGYNYVPSWSNLGYQDLGGFIAGGQILFTLYLD*
Ga0052245_1006697	Ga0052245_10066972	F056273	MAKWKDKMKEWGGGDLTFLSSDGEIIMFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDTAFMVVRHGESGDINASYEVSVLDNEAKTEQLFAIAKKEYKPPLLKQAIKDAKEIMAA*
Ga0052245_1007384	Ga0052245_10073842	F078009	MPREKIFLTPEQLNRLKGLDTDIVWLREEIRRAEFVGIDIADLKKRFEKTTSIRERMIEEYSK*
Ga0052245_1008173	Ga0052245_10081731	F078009	MAREKIYLTPDQLNRLKGLDTDIDWLREEIRRAEFVGIDIADLKKRFEKTTSIRERMIEEYSK*
Ga0052245_1009247	Ga0052245_10092471	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASIIDNEKLDLRVFVKSDKYTGATKKGFRFYLFDNNWTEFKKLIDKIDKAYEEMG*
Ga0052245_1012050	Ga0052245_10120502	F075650	MSLENWVKLPIGKVVCMRFREYLVTPRQITDPMFNVPRTVESLVFLVSHVDGKPVDKTFSVVSEKLAQEFEPYLEDGSYKNYVWCLVKDAAGFVPPRVAKRTRV*
Ga0052245_1012686	Ga0052245_10126861	F041583	MEDKMYLVVTLRKEVPDRETGRTIYDLVKERMADKPDVEVNGHVSNHFDFGNPPPT*
Ga0052245_1016800	Ga0052245_10168003	F041583	MGDQMQIVITLRKEVPDRDQARIIYDIVKQKMADRPDVQITGHCTNHFDLDND*
Ga0052245_1018842	Ga0052245_10188421	F076639	KAPILWMHEAITYLGLDRLGLTRPDRAMYRLIKKGALHPKKIAGRFAFDKAELDIVVANGDQKRGRGRPRKFQLRK*
Ga0052245_1020956	Ga0052245_10209561	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASLIDKEKLDLRIFIKTDSYTGATKRGFRFYLFDNNWIEFKKLIDKIDKAYQEIG*
Ga0052245_1021509	Ga0052245_10215092	F056273	MAKWKEKMKEWGGGDLTFLSSDGEVIMFIVVDDPQLLQGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDTAFMVIRHGESGDINASYEVNILDNEAKTEQLFAIAKKEYKPALLKQAIKDAKEVMAG*
Ga0052245_1022186	Ga0052245_10221861	F046170	MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLTATLMSVFGWWRRYERWSEHVSHGFLYDLPRFAYSLTKALGAGSKRGRGSGSRAVQEAQRILNEKLRTKALTQGGGRPADRIYQQQAKVGLEF*
Ga0052245_1023252	Ga0052245_10232522	F091296	VIKRYPHTATLSYYDPGTYSTVGVYTVGSLVTILIICNAQPNSTKYIIGESGDMIGYNWFVSSPIFAGAGDVPKAAKLTFFNKEHIILQLFEYQKHIEMKC*
Ga0052245_1023378	Ga0052245_10233782	F083668	MKKWPPDKVTALVLIVGCLALAFCGIDGEIKAILTISATYLFTVSYQERHKQA*
Ga0052245_1023425	Ga0052245_10234251	F085104	MKPVPYLGDTDLMEIHAVVTPTKIIAELEKHRDRYIKTLDDVKRIYEAQTERYAEAYKEYTQKEINGELTETDRKAKPVEPHMPADRTKTYDRYIALYKATQADSVYLNMQHFGEFFLDEWEFIRTHISHLRVLRAGGTGTYLDSDLSAIAASALTMYGS*
Ga0052245_1029767	Ga0052245_10297671	F044219	MAKASTKDFEIYVELQTTTAQANQALDLTDYVDIADNQAFEVHDMDIVLDPTAPFPGADVEVRFQLADSNIQAFVSHANRTSLYVARKTYDTATLSMFHEESFSSLTPLIVSKTIFMRTVTSTGSEDFTLR
Ga0052245_1030499	Ga0052245_10304991	F083668	TPDKVCAVILIVGCLLLVAFRIDGEVKSILTISAGYLFGTGIMEYRTKKKGK*
Ga0052245_1031091	Ga0052245_10310911	F085104	MEIHAVVTSADILKVLEKHRDRYIKTLDDVKRIYEAQTERYAEAYKEYTQKEINGELTEADKKAKPVEPRMPPDRTKTYDRYIALYKATQGERVYLSEQHFGEFFLDEWDFIRTHISHLRVLRAGGTGTFLNEELSAVAGNALMMYGS*
Ga0052245_1034861	Ga0052245_10348612	F078009	MAREKIYLTPDQLNRLKGLDTDIDWLREEIRRAELVGIDIADLKARFEKTTSIRARMIQEYSK*
Ga0052245_1035101	Ga0052245_10351012	F098316	MGIIRAETIARARKYIREGVSASRWVREMREAGLSYRRTDMLADYRSVLQLEKKEGAFRYIRKDRYPTEATIAAVGWAISKEYMYKVKVQSVLRLGEPLTERFVNIQSDVPMTPAMVEAEVEEQWEQWERYAPELITGLQVWSAVRKVME*
Ga0052245_1037019	Ga0052245_10370192	F083668	MKWTPDKVTALILVVGCLVLIFTGRDSEVKSILTVAAGWLFGASYVDIKRGGKI
Ga0052245_1037595	Ga0052245_10375952	F098316	LSASKFITDMREVGLSYRRTDMLSDWRSVNELEVKEGLIRYVRRDRYPTEKTIASVDWAVSKEFMYKVKVQSIIQPGMPLTERFVNILSDVPMTPTMVEDEVLTRWGEWEKYQAEDVKGLQVWSAVRKVME*
Ga0052245_1038092	Ga0052245_10380921	F074370	MADKMAEKLAEAKKKMFGAQQPSGKVIILVKGDALIKSTDPKVEVRKQE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003143: Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences