3300003143: Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf

Overview

Basic Information

• IMG/M Taxon OID: 3300003143
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111471 | Gp0097591 | Ga0052245
• Sample Name: Marine sediment microbial communities from deep subseafloor - Sample from 48.5 mbsf
• Sequencing Status: Permanent Draft
• Sequencing Center: Japan Agency for Marine-Earth Science and Technology
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 36847613
• Sequencing Scaffolds: 30
• Novel Protein Genes: 30
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	28
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Aerophobetes → unclassified Aerophobetes → Candidatus Aerophobetes bacterium Ae_b3b	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Sediment Microbial Communities From Deep Subseafloor
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Deep Subseafloor

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → oceanic subsurface zone → marine sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Northwestern Pacific Ocean
• Coordinates
  • Lat. (^o): 41.1773
  • Long. (^o): 142.2013
  • Alt. (m): N/A
  • Depth (m): 1180.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008850	Metagenome	327	Y
F020845	Metagenome	221	Y
F041583	Metagenome	159	Y
F044219	Metagenome	155	Y
F046170	Metagenome / Metatranscriptome	151	Y
F056273	Metagenome	137	Y
F074370	Metagenome / Metatranscriptome	119	Y
F075650	Metagenome	118	Y
F076639	Metagenome	118	Y
F078009	Metagenome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0052245_1000096	Not Available	3341
Ga0052245_1000121	Not Available	3146
Ga0052245_1000910	Not Available	1776
Ga0052245_1001773	Not Available	1440
Ga0052245_1001819	Not Available	1430
Ga0052245_1002711	Not Available	1228
Ga0052245_1003327	Not Available	1083
Ga0052245_1004165	Not Available	892
Ga0052245_1006697	Not Available	1343
Ga0052245_1007384	Not Available	1209

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0052245_1000096	Ga0052245_10000964	F083668	MSWTPDKICAVILIVGCLLLVAFRIDGEVKSILTISAGYLFGTGIMEYRTKKKGK*
Ga0052245_1000121	Ga0052245_10001214	F008850	MAISKRAKARLKIMTAGEKAAVKKATKLLYNSELLGVKRMREILRFADKC*
Ga0052245_1000910	Ga0052245_10009105	F089412	SGVGFVRSADSTIPANVDYISLISTNNFFVQLQGTGNATAKDVAGRVWGYRARADAATYAALVQSEVLSA*
Ga0052245_1001773	Ga0052245_10017731	F020845	MNKTKQTEQKEIGRVKLGDTQDLVVSIVDDEKVDLRIFLNTDSYKGPTKRGVRFYMFDDNWLEFMKLMEKVDRKYQELT*
Ga0052245_1001819	Ga0052245_10018192	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASLIDKEKLDLRIFIKTDSYTGATKRGIRFYLFDNNWIEFKKLINK
Ga0052245_1002711	Ga0052245_10027111	F083668	MKWTPDKVTALILVVGCLVLIFTGRDSEVKSILTVAAGWLFGASYVDIKRGGKK*
Ga0052245_1003327	Ga0052245_10033272	F008850	MALSKRARARLKIMSASEKAAVKKSAKLLFDSELMGVKRMREIVRWAEKR*
Ga0052245_1004165	Ga0052245_10041651	F100280	KSFAEQLISLKTEYFNSGNDNFQEIYGSGAIFGIGGRFEGDSGIFWGLELEYFSRKGEPLDYPARKSKKGLLVEGPDLTNMTGVEWNMDKTSTRLTIISVLSTIIYKPLKGSPISPNLTVKTGFTGTKEKFSGEYEYEGSDGWEEFKDDKSAFGFLVGGSGGIEFFSGPFRIFLFCGYNYVPSWSNLGYQDLGGFIAGGQILFTLYLD*
Ga0052245_1006697	Ga0052245_10066972	F056273	MAKWKDKMKEWGGGDLTFLSSDGEIIMFVVVDEPQLLKGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDTAFMVVRHGESGDINASYEVSVLDNEAKTEQLFAIAKKEYKPPLLKQAIKDAKEIMAA*
Ga0052245_1007384	Ga0052245_10073842	F078009	MPREKIFLTPEQLNRLKGLDTDIVWLREEIRRAEFVGIDIADLKKRFEKTTSIRERMIEEYSK*
Ga0052245_1008173	Ga0052245_10081731	F078009	MAREKIYLTPDQLNRLKGLDTDIDWLREEIRRAEFVGIDIADLKKRFEKTTSIRERMIEEYSK*
Ga0052245_1009247	Ga0052245_10092471	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASIIDNEKLDLRVFVKSDKYTGATKKGFRFYLFDNNWTEFKKLIDKIDKAYEEMG*
Ga0052245_1012050	Ga0052245_10120502	F075650	MSLENWVKLPIGKVVCMRFREYLVTPRQITDPMFNVPRTVESLVFLVSHVDGKPVDKTFSVVSEKLAQEFEPYLEDGSYKNYVWCLVKDAAGFVPPRVAKRTRV*
Ga0052245_1012686	Ga0052245_10126861	F041583	MEDKMYLVVTLRKEVPDRETGRTIYDLVKERMADKPDVEVNGHVSNHFDFGNPPPT*
Ga0052245_1016800	Ga0052245_10168003	F041583	MGDQMQIVITLRKEVPDRDQARIIYDIVKQKMADRPDVQITGHCTNHFDLDND*
Ga0052245_1018842	Ga0052245_10188421	F076639	KAPILWMHEAITYLGLDRLGLTRPDRAMYRLIKKGALHPKKIAGRFAFDKAELDIVVANGDQKRGRGRPRKFQLRK*
Ga0052245_1020956	Ga0052245_10209561	F020845	MNKTNQTEQEEIGRIKLSDAQDLVASLIDKEKLDLRIFIKTDSYTGATKRGFRFYLFDNNWIEFKKLIDKIDKAYQEIG*
Ga0052245_1021509	Ga0052245_10215092	F056273	MAKWKEKMKEWGGGDLTFLSSDGEVIMFIVVDDPQLLQGKFKGNPQERIGCPVVTDEGFVLFITGKRVARKLSKFEDRFKDTAFMVIRHGESGDINASYEVNILDNEAKTEQLFAIAKKEYKPALLKQAIKDAKEVMAG*
Ga0052245_1022186	Ga0052245_10221861	F046170	MIRIEDFGEIGYGGLVTLTEWWDNKRIDEGKIGTGDVFKKASFYTYLGVGLTATLMSVFGWWRRYERWSEHVSHGFLYDLPRFAYSLTKALGAGSKRGRGSGSRAVQEAQRILNEKLRTKALTQGGGRPADRIYQQQAKVGLEF*
Ga0052245_1023252	Ga0052245_10232522	F091296	VIKRYPHTATLSYYDPGTYSTVGVYTVGSLVTILIICNAQPNSTKYIIGESGDMIGYNWFVSSPIFAGAGDVPKAAKLTFFNKEHIILQLFEYQKHIEMKC*
Ga0052245_1023378	Ga0052245_10233782	F083668	MKKWPPDKVTALVLIVGCLALAFCGIDGEIKAILTISATYLFTVSYQERHKQA*
Ga0052245_1023425	Ga0052245_10234251	F085104	MKPVPYLGDTDLMEIHAVVTPTKIIAELEKHRDRYIKTLDDVKRIYEAQTERYAEAYKEYTQKEINGELTETDRKAKPVEPHMPADRTKTYDRYIALYKATQADSVYLNMQHFGEFFLDEWEFIRTHISHLRVLRAGGTGTYLDSDLSAIAASALTMYGS*
Ga0052245_1029767	Ga0052245_10297671	F044219	MAKASTKDFEIYVELQTTTAQANQALDLTDYVDIADNQAFEVHDMDIVLDPTAPFPGADVEVRFQLADSNIQAFVSHANRTSLYVARKTYDTATLSMFHEESFSSLTPLIVSKTIFMRTVTSTGSEDFTLR
Ga0052245_1030499	Ga0052245_10304991	F083668	TPDKVCAVILIVGCLLLVAFRIDGEVKSILTISAGYLFGTGIMEYRTKKKGK*
Ga0052245_1031091	Ga0052245_10310911	F085104	MEIHAVVTSADILKVLEKHRDRYIKTLDDVKRIYEAQTERYAEAYKEYTQKEINGELTEADKKAKPVEPRMPPDRTKTYDRYIALYKATQGERVYLSEQHFGEFFLDEWDFIRTHISHLRVLRAGGTGTFLNEELSAVAGNALMMYGS*
Ga0052245_1034861	Ga0052245_10348612	F078009	MAREKIYLTPDQLNRLKGLDTDIDWLREEIRRAELVGIDIADLKARFEKTTSIRARMIQEYSK*
Ga0052245_1035101	Ga0052245_10351012	F098316	MGIIRAETIARARKYIREGVSASRWVREMREAGLSYRRTDMLADYRSVLQLEKKEGAFRYIRKDRYPTEATIAAVGWAISKEYMYKVKVQSVLRLGEPLTERFVNIQSDVPMTPAMVEAEVEEQWEQWERYAPELITGLQVWSAVRKVME*
Ga0052245_1037019	Ga0052245_10370192	F083668	MKWTPDKVTALILVVGCLVLIFTGRDSEVKSILTVAAGWLFGASYVDIKRGGKI
Ga0052245_1037595	Ga0052245_10375952	F098316	LSASKFITDMREVGLSYRRTDMLSDWRSVNELEVKEGLIRYVRRDRYPTEKTIASVDWAVSKEFMYKVKVQSIIQPGMPLTERFVNILSDVPMTPTMVEDEVLTRWGEWEKYQAEDVKGLQVWSAVRKVME*
Ga0052245_1038092	Ga0052245_10380921	F074370	MADKMAEKLAEAKKKMFGAQQPSGKVIILVKGDALIKSTDPKVEVRKQE*