3300002982: Upper troposphere microbial communities from Midwestern USA - DC3-135

Overview

Basic Information

• IMG/M Taxon OID: 3300002982
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110167 | Gp0085212 | Ga0007658
• Sample Name: Upper troposphere microbial communities from Midwestern USA - DC3-135
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 2061514
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei
• Type: Environmental
• Taxonomy: Environmental → Air → Outdoor Air → Unclassified → Unclassified → Upper Troposphere → Upper Troposphere Microbial Communities Above Oceans And Continental Usa That Affect Ice Or Cloud Condensation Nuclei

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Aerosol (non-saline)

Location Information

• Location: Midwestern USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024268	Metagenome / Metatranscriptome	206	Y
F025749	Metagenome	200	Y
F054846	Metagenome / Metatranscriptome	139	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI25847J45729_10008	Not Available	4419
JGI25847J45729_10067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Hypericibacter → Hypericibacter terrae	1035
JGI25847J45729_10113	Not Available	727

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI25847J45729_10008	JGI25847J45729_100083	F025749	MTIRDIRRVLFETEKYTVIGSDEMTNKESRDFLYVKDNQDEVMNVIDNNSHLLIWG*
JGI25847J45729_10067	JGI25847J45729_100672	F024268	TEFFANSEAVGSTEWSLTTDTAGPDVEVTKGCFQIFLDISDMIAGDELEIKIYEKVQSSDTQRVIYQSNLIGPQSPAVWVSPSLILLNGWDVTLKTIAGGTITVSWSIRKAG*
JGI25847J45729_10113	JGI25847J45729_101131	F054846	MPRRGAEGRGQGRESRKSLSEHDTSRKPERVPMYQQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQEAKAEKAKEQTATIFGKQRNDPDFFSRDENGRDTPASRGIGRVTTNDFVL*