3300002977: Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden

Overview

Basic Information

• IMG/M Taxon OID: 3300002977
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111348 | Gp0099493 | Ga0053369
• Sample Name: Biogas reactor microbial communities from Swedish University of Agricultural Sciences, Alnarp, Sweden
• Sequencing Status: Permanent Draft
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 134240476
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium ADurb.Bin239	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Biogas Reactor Microbial Communities From Swedish University Of Agricultural Sciences, Alnarp, Sweden, And As, Norway That Are Enriched On Cellulose
• Type: Engineered
• Taxonomy: Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Biogas Reactor → Biogas Reactor Microbial Communities From Swedish University Of Agricultural Sciences, Alnarp, Sweden, And As, Norway That Are Enriched On Cellulose

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: SLU, Alnarp, Sweden
• Coordinates
  • Lat. (^o): 55.656904
  • Long. (^o): 13.082968
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008498	Metagenome / Metatranscriptome	332	Y
F014634	Metagenome / Metatranscriptome	261	Y
F022612	Metagenome / Metatranscriptome	213	Y
F077200	Metagenome / Metatranscriptome	117	N
F103990	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
soap12_1000504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Tenericutes bacterium ADurb.Bin239	1006
soap12_1004097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium	1052
soap12_1024288	Not Available	1468
soap12_1042940	Not Available	2619

Sequences

Scaffold ID	Protein ID	Family	Sequence
soap12_1000504	soap12_10005041	F103990	GCIGLKSSNILNQKQKDKINEVVRLITIEKRLGKTSITKEDADFVKALSDTKHYPRAEYVLARMYLCGYQIEQDKTMGMKYLARSSRHAGYDLQLKIAYMYHVLGETKTIKECLKSARDDCI*
soap12_1004097	soap12_10040972	F022612	MRKILAYSNQYRRIRKDVARRLFKEGKTIYLTPSNVAANDSNPWIKPYAINNRTERDFDSIVNNYEYYNCCYELGYYTNFWINEEEEEE*
soap12_1004097	soap12_10040973	F014634	MIREKIKEIFDLERIREYAETNIDLTEWIEEEYGETRKILLIATLVEGGYGAYVPGMVLELFGQADDYDLEDPYNLEKNETIYDALMSLETEVNKCLNELLPAKGTYYMGYHEADG
soap12_1024288	soap12_10242883	F008498	MGTVSYKNQPAIDKTKGNVPLAGTSHIYKVKKRLWNDSIEDVLQELFIGRTLHVCCGKSLIGDVRLDIDAEHNPDIVCDASNMKDFVKDNEFETVLCDPPYNGKFQWNHDLLYELQRVASKRIIFQHWFIPANKDGLYKKAQEKFELTELLCWQPKTYFGRVQMVSVFDRR*
soap12_1042940	soap12_10429401	F077200	YNMTPEEALERKRIGENYFPIRDQKIVAAGVINFFSKEEKIGIMAAVFAGEEKKILDNLAKRLDKIVKTTGKPFFVTGDGRKYALEILAGRAMSYMIEAKQKDQEVIPELQDMIKIITSPKNGYLKPFDTRDSIDIQAAFGLGHDIIPLPEKLQYTNEDLPELAENVKGILLDMMKNYACYAEVQGEKMKPVIYKLNEKVFKTTEIFKFEDHDESDIEKTLDKEELEIER*