3300002952: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002952
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088367 | Ga0008108
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-7-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 126670649
• Sequencing Scaffolds: 18
• Novel Protein Genes: 21
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	18

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26055J44792_1014687	Not Available	1433
JGI26055J44792_1018143	Not Available	1179
JGI26055J44792_1020301	Not Available	1064
JGI26055J44792_1021367	Not Available	1018
JGI26055J44792_1023357	Not Available	943
JGI26055J44792_1030909	Not Available	749
JGI26055J44792_1032297	Not Available	724
JGI26055J44792_1033604	Not Available	701
JGI26055J44792_1039833	Not Available	617
JGI26055J44792_1041456	Not Available	599
JGI26055J44792_1042129	Not Available	592
JGI26055J44792_1044220	Not Available	572
JGI26055J44792_1045017	Not Available	565
JGI26055J44792_1045727	Not Available	559
JGI26055J44792_1048818	Not Available	533
JGI26055J44792_1049361	Not Available	529
JGI26055J44792_1052362	Not Available	508
JGI26055J44792_1053011	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26055J44792_1009472	JGI26055J44792_10094721	F010514	LVPNSVHTRPGQENSEKNSKKIQKINKPLSGINFSQNGMR*
JGI26055J44792_1014687	JGI26055J44792_10146871	F010514	EIGRKCENKILVLNSVHPRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26055J44792_1018143	JGI26055J44792_10181431	F010514	LAKTDEIGQKSENKILVPNSVHTRPAQENSEKIIKPLPGIISSQNGVI*
JGI26055J44792_1020301	JGI26055J44792_10203011	F010514	LVPTSVHTRPGQENSEKNSKKIQKIIKPLPGFIFSQNGRR*
JGI26055J44792_1021367	JGI26055J44792_10213671	F010514	LPKLDEIGQKREKKILVPNSILTRPGQENSEKNSKKIQKIIKPLPRIIFSQNGMQKAKNVKTKF*
JGI26055J44792_1021619	JGI26055J44792_10216191	F038929	MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISG
JGI26055J44792_1023357	JGI26055J44792_10233571	F038929	MKRVRIGRKIEKKKNFIPIRLNXSRVTKFKNEGKKILKIKKHHPGFISRRNGSGQAEE*
JGI26055J44792_1030909	JGI26055J44792_10309092	F038929	KRVRIGRKIEKKKNFIPIRSNPTRVRKFKNKCKNILKIKKHHPGFISRRNRSRQAAK*
JGI26055J44792_1032297	JGI26055J44792_10322971	F010514	VPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGXR*
JGI26055J44792_1032420	JGI26055J44792_10324201	F038929	QKIENKKNFIPIRSNPTRVRKFKNKCKKILKIKKQHPGFISRRNGSGQAEK*
JGI26055J44792_1033604	JGI26055J44792_10336041	F038929	MTIRARIGRKIENKNNFLPIRSNPARVRKFENKCKKILKIKKHHPGFISRRNGSGQTEKLITK
JGI26055J44792_1039833	JGI26055J44792_10398331	F010514	SENEILHQNLVHTRPGQKNSEKNSKKIQKYIKPLPSIIFSQNRTR*
JGI26055J44792_1041456	JGI26055J44792_10414561	F010514	KRDEIGRKSEIKILVPNSVHTRPGQENSEKHSTKIQKILKPLLGIIFSQNGMR*
JGI26055J44792_1042129	JGI26055J44792_10421291	F010514	MGRKKENKILVPNSVHTRHGQENSEKNSKKIQKIIKPLPTLFLAKTG*
JGI26055J44792_1044220	JGI26055J44792_10442201	F010514	YFYTKRDQMGRKKENKILVPNSVHTRHGQENSEKNSKKIHKMIKPLPDIIFSQNGMR*
JGI26055J44792_1045017	JGI26055J44792_10450171	F010514	SENKILVPNSVLTRPRQENSKKNSIKIIKPHPIIISSQKGMR*
JGI26055J44792_1045727	JGI26055J44792_10457271	F010514	MGQKSENKILVPNSVHTRPERENSEKNSKKIQKIIKPLPGIIFSQNGMR*
JGI26055J44792_1048818	JGI26055J44792_10488181	F010514	KRDGINRKSENKILVPNSVLTRPGQENSEKNSKKIQKNIKPLPGIISSQNGME*
JGI26055J44792_1049361	JGI26055J44792_10493611	F038929	RKIEKKKNFILIRSNPIRVKKFKNKCIKILKIKNHYPGFISRRNGSGHAAK*
JGI26055J44792_1052362	JGI26055J44792_10523621	F038929	NRKRFRTDRKIEMKKNFIPIRTNPTRVRKFKNECKKILKIKKHHPGFISI*
JGI26055J44792_1053011	JGI26055J44792_10530111	F038929	GRKIEKKKNFIPIRSNTTRVIKFKNKCKKILKIKKDHPGFIST*