3300002949: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002949
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088363 | Ga0008104
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-3-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100370668
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	16

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26051J44788_1007909	Not Available	1413
JGI26051J44788_1008905	Not Available	1278
JGI26051J44788_1010595	Not Available	1097
JGI26051J44788_1012697	Not Available	940
JGI26051J44788_1014568	Not Available	844
JGI26051J44788_1019484	Not Available	690
JGI26051J44788_1020273	Not Available	672
JGI26051J44788_1021287	Not Available	651
JGI26051J44788_1022485	Not Available	628
JGI26051J44788_1023245	Not Available	615
JGI26051J44788_1024313	Not Available	598
JGI26051J44788_1024997	Not Available	588
JGI26051J44788_1025404	Not Available	582
JGI26051J44788_1027465	Not Available	555
JGI26051J44788_1029771	Not Available	528
JGI26051J44788_1030634	Not Available	519

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26051J44788_1007909	JGI26051J44788_10079092	F038929	MKRVRTGSKMENKNNFIPNRSNPTRVRKFKNKCKKILKIKKHH
JGI26051J44788_1008905	JGI26051J44788_10089051	F010514	GRKSEYKILVPNSVHTRPEQENSEKNRKKIQKIVKPLPDIIFSQNGMR*
JGI26051J44788_1009334	JGI26051J44788_10093343	F038929	MTGRKIETKKNFLPISSITTRVRELKNKCKKIRKIKKQHPGFILRRNGSGQA
JGI26051J44788_1010595	JGI26051J44788_10105951	F010514	LFLAKTDEIGRKSENKILVPNSXHTRPGQENSEKNSKKIQXXIKPIPGIIFSQNGKI*
JGI26051J44788_1012697	JGI26051J44788_10126971	F010514	KILVPNSVHTLPGQENSEKNNKKIQKILKPLLGNIFSQNGMR*
JGI26051J44788_1014403	JGI26051J44788_10144031	F038929	GRKIENQKNFPPIRSNPTRVRKFKNKRKKILKIKQRHPGFISTQNGSRQVEK*
JGI26051J44788_1014568	JGI26051J44788_10145681	F010514	VKKILVPNSVHTRLGQENSEKNSNKIQKIIKPLPGIIFSQNGMR*
JGI26051J44788_1019484	JGI26051J44788_10194841	F010514	LVPNSVHTRPGQENSEKYSKKIQIFIKPLFGIIFSKNGMR*
JGI26051J44788_1020273	JGI26051J44788_10202732	F010514	ITGREGQKSENKILPQNSVHTRPEQENSEKNSKKIQKIIKPIAGIIFSENRMR*
JGI26051J44788_1021287	JGI26051J44788_10212871	F010514	PALFLAKTDEIGEKSENKILVPNSVHTRPGQEIFEKNSKKVQKIKKPIHGIIFSPNGKI*
JGI26051J44788_1022485	JGI26051J44788_10224851	F010514	DEIGQKRENKIFVPNSVQTRPKQDNSKKNSKKIQKIIKRPPGIISSQNGMG*
JGI26051J44788_1022793	JGI26051J44788_10227931	F010514	RDEIG*KSENEILLPNSVHTRPGQENSEKNSKKIQKIIKPLTGIIFCQNGTRKAEKEKTKF*
JGI26051J44788_1023245	JGI26051J44788_10232451	F010514	PKNDEIGRKSENEILLQNSVHTRLGQENSEKNSEKIQKIVKPLPDIIFSQYGMS*
JGI26051J44788_1024313	JGI26051J44788_10243131	F010514	IGRKSKNKILLQNSVRNRPGQENSEKNSKKIQKIIKPLPGIIFSQKGMR*
JGI26051J44788_1024997	JGI26051J44788_10249971	F010514	KLVPNSVLTRPGQENSEKNCKKIQKIIKPLPGIIFSQNGKI*
JGI26051J44788_1025404	JGI26051J44788_10254041	F010514	VPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGMR*
JGI26051J44788_1027465	JGI26051J44788_10274653	F038929	GVHFKMKRVRTGQKIEIKKNFIPIRSNPTRVRKIKNKCKKI*
JGI26051J44788_1029771	JGI26051J44788_10297711	F038929	MTIRVRKGRKIENKKKFIPIRSNPTRIRKFKNKCKKILKITKHHPGFISRRNGSGQAE
JGI26051J44788_1030634	JGI26051J44788_10306341	F010514	IGRKRVKKILVPNSVHTRLGQENSEKNSNKIQKIIKPLPGIIFSQNGMR*