3300002948: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002948
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088362 | Ga0008103
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-2-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70944855
• Sequencing Scaffolds: 10
• Novel Protein Genes: 14
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010514	Metagenome	302	Y
F038929	Metagenome / Metatranscriptome	164	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26050J44790_1007962	Not Available	1190
JGI26050J44790_1010782	Not Available	921
JGI26050J44790_1012782	Not Available	806
JGI26050J44790_1015627	Not Available	699
JGI26050J44790_1019275	Not Available	601
JGI26050J44790_1020520	Not Available	575
JGI26050J44790_1021042	Not Available	566
JGI26050J44790_1023170	Not Available	530
JGI26050J44790_1024186	Not Available	515
JGI26050J44790_1025356	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26050J44790_1007962	JGI26050J44790_10079621	F038929	MENKKNLFPTRPNPTRVTEFKNKCKKILKIKKYHPGFISIRNGPGQAEK*
JGI26050J44790_1007962	JGI26050J44790_10079622	F038929	MKRVRSGRKIENKKNFIPIRSNPTRVRKFKNKYKKILKIKKHHPGLISRRNGSGEAEK*
JGI26050J44790_1010782	JGI26050J44790_10107821	F038929	VKTGRKIETKKNFLPISSITTRVREFKNKCKKIRKIKKQHPGFILRRNGSGQAEK*
JGI26050J44790_1012782	JGI26050J44790_10127821	F038929	MGRKIENKNNFFPIRSNQTRVRKLKNKCKKILKIKKRHPGFISRRNGLGQAEK*
JGI26050J44790_1015627	JGI26050J44790_10156271	F010514	KKILVPNSVHTRLGQENSEKYSKKIQKIIKPLPGIISNQNGMR*
JGI26050J44790_1016669	JGI26050J44790_10166691	F010514	MKKKNLVPNSVHIGPGKENSEKNRNEIQKIRKSLSGINFSQNGMR*
JGI26050J44790_1019275	JGI26050J44790_10192751	F010514	VKKNLVPNSVHTRLGQENSEKNSNKIQKIXKPXPGIIFSXNGMX*
JGI26050J44790_1020520	JGI26050J44790_10205201	F010514	MGRKKENKILVPNSVHARHGQENSEKNSKKMQKFIKHLPGIIFSQNGTR*
JGI26050J44790_1021042	JGI26050J44790_10210421	F010514	RENEILVPNSVHT*HGQENSKKNSKKIQKIIKPPPGIIFSRNRMR*
JGI26050J44790_1021436	JGI26050J44790_10214361	F038929	MKRVKTDRKTENKKYFFPLRSNPTRVRKFKNECKKVLKIKKHHPGFISGKNGSGQAEK*
JGI26050J44790_1021725	JGI26050J44790_10217251	F010514	KRDEIGRKRVKKILVPNSVHTRPGKENSEKNCKKIQKIIKPLPSIIFSQNGMR*
JGI26050J44790_1023170	JGI26050J44790_10231701	F038929	MKRVRTGRKIGNEKNFIPIRSNPTRVRKLKNKRKKILKIKKHHPGFISRRNVSG*
JGI26050J44790_1024186	JGI26050J44790_10241861	F038929	MQKNFKNYKTSSRLHLNTKRVRAGGKIENKKNFIPIRSNPTRVRKFKNECKKILKIKK
JGI26050J44790_1025356	JGI26050J44790_10253563	F038929	VRTGCKIENKNNFIPNRSNLTRVRKLKNKCQKSLKIKKHHPGFISI*