3300002918: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D

Overview

Basic Information

• IMG/M Taxon OID: 3300002918
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0110114 | Gp0088361 | Ga0008102
• Sample Name: High solid enriched microbial communities from the Joint BioEnergy Institute, USA - SP1-1-D
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 149050278
• Sequencing Scaffolds: 14
• Novel Protein Genes: 14
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	1
All Organisms → cellular organisms → Bacteria	1
Not Available	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Ionic Liquid And High Solid Enriched → Ionic Liquid And High Solid Enriched Microbial Communities From The Joint Bioenergy Institute, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Joint BioEnergy Institute, California, USA
• Coordinates
  • Lat. (^o): 38.5402
  • Long. (^o): -121.75
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000617	Metagenome	982	Y
F010514	Metagenome	302	Y
F010645	Metagenome / Metatranscriptome	301	Y
F038199	Metagenome	166	Y
F038929	Metagenome / Metatranscriptome	164	Y
F063614	Metagenome / Metatranscriptome	129	Y
F087072	Metagenome / Metatranscriptome	110	Y
F087914	Metagenome / Metatranscriptome	110	N
F099151	Metagenome / Metatranscriptome	103	N
F101010	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26049J44785_1000367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	25019
JGI26049J44785_1001540	All Organisms → cellular organisms → Bacteria	11155
JGI26049J44785_1002215	Not Available	8693
JGI26049J44785_1005640	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3992
JGI26049J44785_1006201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	3614
JGI26049J44785_1011812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1985
JGI26049J44785_1022601	Not Available	1092
JGI26049J44785_1026430	Not Available	948
JGI26049J44785_1034028	Not Available	758
JGI26049J44785_1042345	Not Available	628
JGI26049J44785_1046473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	583
JGI26049J44785_1048419	Not Available	563
JGI26049J44785_1049186	Not Available	556
JGI26049J44785_1055811	All Organisms → cellular organisms → Bacteria → Proteobacteria	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26049J44785_1000367	JGI26049J44785_100036715	F010645	MYGAWYGEVLARERQERLLEEAQERRLARMVAGPGLRARAARWLFGLALLLERRETWRAVWERLEAPR*
JGI26049J44785_1001540	JGI26049J44785_100154015	F000617	VREVDLNRVEVPEGYEVLDATALARRLGIKRETVLVYLSRRNFKNIPRPNRKLAMGPVWYEASVREWERRRAGG*
JGI26049J44785_1002215	JGI26049J44785_10022159	F099151	VVIMRFREEIYKENGEIIKKFYIDDKEVTQDVYYNLTDELYENTKLKQEEHNDEICDCEECQYFLELINEIRNSSDKEALEILKSEIDFRVQEAYIEGQHVLANELGNSLLKHAVKLEDELDDLYENGSLNEYNEDS*
JGI26049J44785_1005640	JGI26049J44785_10056405	F101010	MILFNNVYATVWEIEDKGNFVKGRISTSEKNKEGKYVNSYWFATFVGKAKEPALALSAKDRIKIASGKISNTTTGEGKDKKSFVNVVIFDFENLSNSQNNFQPNESMDDLPF*
JGI26049J44785_1006201	JGI26049J44785_10062015	F038199	MIQYTQAEFLQLLQQYNSTDRSIIKANLKRIMDIYNIKPADIISLGYSHRNVYAWTNKSTKNIPLFEQALYISTRFNFSITEFIK*
JGI26049J44785_1011812	JGI26049J44785_10118121	F063614	MTYTRLRITIDTLVKTGLEKVNVLGVEESQDDLWQIHELCNELMAFWDSELTEERIDELEEIIAELPLLQRV*
JGI26049J44785_1022601	JGI26049J44785_10226011	F038929	MIRVRTGRKIENKKFIPIRSNPTRVRKFKNKCKKILKITKHHPGFIS
JGI26049J44785_1026430	JGI26049J44785_10264302	F010514	LPKQDEIGQKRENKILVPNSVLTRPGQENSEKNSKKIQKIIKPLPGIIFSQNGMQ*
JGI26049J44785_1034028	JGI26049J44785_10340281	F010514	RKRDEICRKRENKILVPNSVHTRPGQENSERNSKKIQKIIKPLLGIIFS*
JGI26049J44785_1042345	JGI26049J44785_10423451	F010514	ILVPNSVHTRPGQENSENNSKKIQKIINPIPGIISSQNGKI*
JGI26049J44785_1046473	JGI26049J44785_10464731	F087072	MKATVFTKRIFSLELTEEELGIIAGALYFANNEDIKYFVDKYKYPCSGYSFDEVAELQEKLSEEVNKLIENR*
JGI26049J44785_1048419	JGI26049J44785_10484191	F010514	LVPNSVLTRPGQENSEKNCKKIQKIIKPLPGIIFSQNGKI*
JGI26049J44785_1049186	JGI26049J44785_10491861	F038929	MKKLVRTGRKIENNKNFIPIRTNPTPVRKFKNKCKKILKIKKHHPGLISRRNG*
JGI26049J44785_1055811	JGI26049J44785_10558111	F087914	MGDVIHVAFGIEREWERAREHAIDGLVTIGALFGDDEALMRAKAECVYQLLRRIVEDMPPLQITTALPDDLSEGQLALVTDALKSAA