3300002901: Soil microbial communities from Manhattan, Kansas, USA - Sample 100um Nextera

Overview

Basic Information

• IMG/M Taxon OID: 3300002901
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0099547 | Gp0055088 | Ga0006116
• Sample Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 100um Nextera
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50231221
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	1
Not Available	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	1
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → prairie → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000268	Metagenome / Metatranscriptome	1411	Y
F001985	Metagenome / Metatranscriptome	608	Y
F004556	Metagenome / Metatranscriptome	433	Y
F006477	Metagenome / Metatranscriptome	372	Y
F024665	Metagenome / Metatranscriptome	205	Y
F037171	Metagenome / Metatranscriptome	168	N
F043815	Metagenome / Metatranscriptome	155	Y
F046965	Metagenome / Metatranscriptome	150	Y
F050653	Metagenome / Metatranscriptome	145	Y
F080380	Metagenome	115	Y
F099265	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI24800J43970_1000386	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728
JGI24800J43970_1000439	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	708
JGI24800J43970_1000719	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	625
JGI24800J43970_1000777	Not Available	617
JGI24800J43970_1001352	All Organisms → cellular organisms → Archaea	546
JGI24800J43970_1001404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	542
JGI24800J43970_1001496	All Organisms → cellular organisms → Bacteria	535
JGI24800J43970_1001777	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	516
JGI24800J43970_1001831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	513
JGI24800J43970_1002009	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	504
JGI24800J43970_1002018	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI24800J43970_1000386	JGI24800J43970_10003862	F050653	MLPLTHAWSRAQKCLLIAAVLIALAAFGTLVYSVERRYRPLDGNILAGTWEMTAPYNKDSSTVLRLDPERTAAWHSGAWVRYPPAGQQGYSEMMWYAGGRYIYMHFEEGSPQIWQIIQILPDELRLRHAKRDYTFKRI*
JGI24800J43970_1000439	JGI24800J43970_10004392	F001985	ARTPGSNPQQATLEYSSYDDKTPMLEGGPQYQLRPGISVIVFANSFDAKIPPGYLVQGTRQELLQRVDALRDALSKMSPDQLKVNEITEDDRRVQMSLYEKLSGSLRAAK*
JGI24800J43970_1000719	JGI24800J43970_10007191	F046965	NENLFAKAKNFDVCNATISDLRTKNEMLHAKVVELKSCKPSTSNVEHASICTRCRDIDVNAILDHMALIKQQNDHIAKLDAKIAEHNLENEKFKFARSMLYNGRRPGIKDGIGFQRGDNVKLNAPPKRLSNFVKGKAPMPQDNEGYILYPAGYPESXIRRIHSRKSHSGPNHAFMYKGETSSSRQPTHVKLPKKKTPSASNEHSLSF
JGI24800J43970_1000777	JGI24800J43970_10007771	F080380	MLFLRISKITRVVAFSAVLIFAADIVADSIADLRGDHCICQGSQPNSQHEKAPCERCSCAVHNGNVITSTLTVDVIGAFPASVFFSTSEQFAPDGLPAAIDHPPQLA*
JGI24800J43970_1001352	JGI24800J43970_10013521	F099265	MGKMNEDSILHFYRILENSLLESDISKIKEGDIDAWSQSFKKVVAESKERSGKGVFVPFLMWRLGEISPVEASKYLDRRKGDECRVSYDHNNVEYVVWVMALMF
JGI24800J43970_1001404	JGI24800J43970_10014041	F037171	MDECMYACNRIENDPVEEPEELAGEAPEQQSVGGGKCPLTYLCPIHSLIHLPLYTFMPKD
JGI24800J43970_1001496	JGI24800J43970_10014961	F000268	MRVVAVMLLLSAGIAAEAMSYSFVSKASGRXGGPIRFEFYXDSTXXPKTDIXSFTVSMRTADDRWKAMWSILSGXGLTQPIEYGVTPPGFTTMIQPQKLIPGRVYAGFASDGHGGSSGVTFGFDKNGRMTFPDSFDR*
JGI24800J43970_1001777	JGI24800J43970_10017771	F004556	MAEKSGHDKSTDELRAEIASSRERVSRDLRGLHYELDFSRKIRRSFREQTGSWITAAAAVGALVILLPLRKKKIYIDAKSGRKSNKKLLETGFALGALKIAAGLVRPVVVEFVRNRLIGIAGQSRRSRRQ*
JGI24800J43970_1001831	JGI24800J43970_10018311	F043815	CYNFAYRKTAKFPVISYRSKWPAGWKSEWFYVKVDEDKEKLVQSPLELTFGETRPHCNMTPEGQTQRAMDEFRIIAEHIGTRDLVQEFLAFKVFPTLKKWEMPKLKGEKKEGDLVRLPYHFKFKKYFKKPCQEWLDTVEVMCNEILGNYSKKEDQLMTAAFGTRPKRRLN
JGI24800J43970_1002009	JGI24800J43970_10020091	F006477	MIVLNLLIVVVASGIAFVAYKHPGAYRVMFIFAFPVLVMGGLLVLAIKIGDLNGSIKSIYHELPNIRKYALSDQLPYQITRLYQVGQFLKVFLIYYISGFAYLVFLLILGGLLDLAGLSKYTEHKGDSKEP*
JGI24800J43970_1002018	JGI24800J43970_10020181	F024665	GALFPAVLVAFVIGPAFAESVTAGEVTFVSPCECQGQKDGTRWPVKTDPSPVPXDKSTIQSVTPSQXYXWKGPGPDVPLTPKTDTRIAAEQKWYNLTGRLDSVKVEDDGDITLVLKDAEGKKAGSVGAEIPVGSTWCELRQIVFGWTTQSFPFSFKESQRLEMRETH