3300002883: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_200m_A (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002883
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055361 | Ga0005250
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_200m_A (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 42830487
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Luminiphilus → Luminiphilus syltensis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046847	Metagenome / Metatranscriptome	150	N
F058538	Metagenome / Metatranscriptome	135	N
F061392	Metagenome / Metatranscriptome	132	N
F066454	Metagenome / Metatranscriptome	126	N
F098669	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005250J43194_1000043	Not Available	511
Ga0005250J43194_1003846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Luminiphilus → Luminiphilus syltensis	1320
Ga0005250J43194_1004889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium	1606
Ga0005250J43194_1006079	Not Available	509
Ga0005250J43194_1037320	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	537

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005250J43194_1000043	Ga0005250J43194_10000431	F098669	METATRGRKQKWRLKEAEGLGRKRRIGETERRELHESDQGLDPGHGLNPGRKVRRIDQAMEGSPEIVPAKIRKKPC
Ga0005250J43194_1003846	Ga0005250J43194_10038463	F058538	GRNMYSQYETTVINRRRLHDILNWVNQKYHLEYEVVQKNRDVFYVIFHDLNIKQTVAIQKQIKGIAQPEHFDMH*
Ga0005250J43194_1004889	Ga0005250J43194_10048892	F058538	MYSQYETTVMNRRRLHHLLSWVNHELHSDYEVIQENRDVFYVIFHDLDILKTVAIQKHLKSNPHTAN*
Ga0005250J43194_1006079	Ga0005250J43194_10060791	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQLKGDKPYLFSGGEVQPKKVDATSNRA
Ga0005250J43194_1008288	Ga0005250J43194_10082882	F066454	MSIRLDVLILINSGVTDRSEIMEKLGVNIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPKRKIPDY
Ga0005250J43194_1037320	Ga0005250J43194_10373201	F061392	MICAVFIVGLILSLQSFASGLNEPDPTFKLAATLSPIDGGELYVGDVDRDKQTFRLHLRHIGKNSKWSYYYANAGAFVNEDGDVEPDNAVASIEYPQYTASIIGNTFRKARVRILFSPRGDGKGFFKEAGHVIFQECATKTFEAKNWKCTGWEYLGTLPGF*