3300002876: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_120m_B (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002876
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0055354 | Ga0005243
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - MetaT SI073_120m_B (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25140937
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.7299
  • Long. (^o): -123.5699
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006550	Metagenome / Metatranscriptome	370	N
F012282	Metagenome / Metatranscriptome	282	Y
F016399	Metagenome / Metatranscriptome	247	Y
F042625	Metagenome / Metatranscriptome	158	Y
F066454	Metagenome / Metatranscriptome	126	N
F066733	Metagenome / Metatranscriptome	126	N
F067819	Metagenome / Metatranscriptome	125	N
F081198	Metagenome / Metatranscriptome	114	N
F102081	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0005243J43192_105806	Not Available	678
Ga0005243J43192_106315	Not Available	1010
Ga0005243J43192_106592	Not Available	510
Ga0005243J43192_107376	Not Available	1199
Ga0005243J43192_108100	Not Available	714
Ga0005243J43192_108798	Not Available	1118
Ga0005243J43192_112463	Not Available	884
Ga0005243J43192_117440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	635

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005243J43192_105806	Ga0005243J43192_1058061	F016399	RRSSIRRVARRGSKGIGSSLKTGIIGDVVKGIGAGSLVSLVMSRVAPNSSITPIASTGAAFLTGGIVGGAANLILSGGLGQLGGIFGGATTPQQEFGV*
Ga0005243J43192_106315	Ga0005243J43192_1063153	F042625	MTSKEERDQLWKDLKASWAVLKRDSGADEVAKGKAKEKINEIQDALKLDKTDWNQPRSGPPGSHLTKAGASPNPSNNALVEKILGTVLDMKRELNEDLVKINQKL
Ga0005243J43192_106592	Ga0005243J43192_1065921	F066733	YEDFVATDMLDTISAEGTLTPGLWIRGDTGATITSSDVASMALDETGIAVGREYLENQGYLRGGIKPICFLDPQQWRELITSSNVTSLATRSAPDIWLKAELEQFMGVQLIVTNAVEHKNNTTNNAVNAYMCVPKHSYGIGIKRDVTVKMHEVGEDNQVRVNTTWRTKAG
Ga0005243J43192_107376	Ga0005243J43192_1073761	F006550	MAKVFNTKKADYNGMQLWLNPVDKTVYASPSAPTYGFTESGAYPIYDYKAHQSGMKTAKDTFGNDSYVHDAFVDAEFKALAEDYVSDVKAGGRQRMAALRSNTNSAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLSQLKELTYTRQNFEASKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVSLADSSLTAKAAAGAWDTFVSSTDRSTANPLLDLGTSQLLIEGSGVGGKLNRIGMHPLDFAKYMGNTFIRGVASTSPSEVSFEPGTRELPGFPGAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASVIQSETGRQITGCTTPTDW
Ga0005243J43192_108100	Ga0005243J43192_1081002	F067819	MESLMVAWGSSQAWWGTACSIVVIANALTMAMKDEYAEKLPILGKIWPIMNWLALNVH
Ga0005243J43192_108798	Ga0005243J43192_1087981	F081198	IPTDVKSEKVEEKVKVTIETDGEVEVGKAEATKTEASDDEKCPEGKKMVAGKCVDAKQESTPESSDLVKATEALTSVIENVGKAWEPKSQVAESTESNGFVEEAFTDVDAKQFMDKLFETGYNKLVMDKEGWIEEHTVPGAADVAGNVTEAVSTSGTISGVKQRSNISIQLGSKTATPLRQYGQFEAIPTGQNTARFYRITNPDAGAITESPTTDITAVTHTLTAIDVTCSIRGWRQVVEKANLEDYPASFLNALRETARLEAIRDEHKLILQDLGATDHDFGGVSTAPYHIGGSDGVATTTTTEEDADGAMDEDGITKAKMYLGKLGNSTAPGQLIAFLSEEAFEALISSTGLSEYTQIGNANVTRLGQLE
Ga0005243J43192_112463	Ga0005243J43192_1124631	F102081	MTSWDVITPTSIGTGVAKTSLGTITKPEEVQSLIEFVPYYAPSGAVTAGESMLLETALESNSVNLLPKRIINPVIQAGLGATFATMIPMLEAWNCNTPLTAGATPQIQAFGQAQIANTVAPSMGVAFHWSNSRPNSPEMFYNKPDNETSTGTAATIVAGNSVTINDGKTLQAVYGAVSMGTVTASNSLLASMQFNSNDFDNSQAIEVPIQPNSVGLGGLTSALNVKGSYYKNVNMGMKQTATISTVLRVSEALAAAGNFIG
Ga0005243J43192_115162	Ga0005243J43192_1151622	F066454	MSIRLDVLILINSGVTDRSEIMERLGINIMSVSNCFRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDEYRQSPQRKIPAYEVMRSHLGVGGD
Ga0005243J43192_117440	Ga0005243J43192_1174401	F012282	KFSRYWNGGTSATDIKFFVITDPSQTYYIQCSLTLSAAEAAIAKNYTVTVSSTASSGSTVTGQSSYYLMASSGAETELAARVVGRAQYPDEGNNDAYPIVEVWLNTHRDRYVTATASTA*