Sample 3300002865

Basic Information
IMG/M Taxon OID	3300002865 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110115 \| Gp0061276 \| Ga0006761
Sample Name	Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_4 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300002865 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110115 | Gp0061276 | Ga0006761

Sample Name

Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_4 (Metagenome Metatranscriptome, Counting Only)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	7251602
Sequencing Scaffolds	33
Novel Protein Genes	41
Associated Families	34

Dataset Contents

Total Genome Size

7251602

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
Not Available	27
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae

Not Available

All Organisms → cellular organisms → Eukaryota

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea

All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.

Ecosystem Assignment (GOLD)
Name	Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Ecosystem Assignment (GOLD)

Name

Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Type

Host-Associated

Taxonomy

Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa, For Root-Enhanced Decomposition Of Organic Matter Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → rhizosphere → soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → rhizosphere → soil

Earth Microbiome Project Ontology (EMPO)

Host-associated → Plant → Plant rhizosphere

Location Information
Location	Hopland, California, USA
Coordinates	Lat. (^o)	38.97364	Long. (^o)	-123.117453	Alt. (m)	N/A	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

Hopland, California, USA

Coordinates

Lat. (^o)

38.97364

Long. (^o)

-123.117453

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001296	Metagenome / Metatranscriptome	728	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003269	Metagenome / Metatranscriptome	496	Y
F005082	Metagenome / Metatranscriptome	412	Y
F008133	Metagenome / Metatranscriptome	338	Y
F013305	Metagenome / Metatranscriptome	272	Y
F014631	Metagenome / Metatranscriptome	261	Y
F015217	Metagenome / Metatranscriptome	256	Y
F018876	Metagenome / Metatranscriptome	232	Y
F025923	Metagenome / Metatranscriptome	199	Y
F026580	Metagenome / Metatranscriptome	197	Y
F027071	Metagenome / Metatranscriptome	195	Y
F027763	Metagenome / Metatranscriptome	193	Y
F029031	Metagenome / Metatranscriptome	189	Y
F034588	Metagenome / Metatranscriptome	174	N
F035116	Metagenome / Metatranscriptome	173	Y
F038031	Metagenome / Metatranscriptome	166	Y
F043723	Metagenome / Metatranscriptome	155	Y
F044324	Metagenome / Metatranscriptome	154	Y
F046210	Metagenome / Metatranscriptome	151	N
F047514	Metagenome / Metatranscriptome	149	N
F056192	Metagenome / Metatranscriptome	138	Y
F066349	Metagenome / Metatranscriptome	126	N
F066797	Metagenome / Metatranscriptome	126	Y
F076133	Metagenome / Metatranscriptome	118	Y
F076910	Metagenome / Metatranscriptome	117	N
F082288	Metagenome / Metatranscriptome	113	N
F083053	Metagenome / Metatranscriptome	113	N
F092500	Metagenome / Metatranscriptome	107	N
F094971	Metagenome / Metatranscriptome	105	Y
F096396	Metagenome / Metatranscriptome	104	Y
F100491	Metatranscriptome	102	Y
F102579	Metagenome / Metatranscriptome	101	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0006761J43178_100035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	826	Open in IMG/M
Ga0006761J43178_100106	Not Available	520	Open in IMG/M
Ga0006761J43178_100131	Not Available	767	Open in IMG/M
Ga0006761J43178_100278	Not Available	599	Open in IMG/M
Ga0006761J43178_100429	Not Available	1004	Open in IMG/M
Ga0006761J43178_100718	Not Available	587	Open in IMG/M
Ga0006761J43178_100939	Not Available	572	Open in IMG/M
Ga0006761J43178_100984	Not Available	822	Open in IMG/M
Ga0006761J43178_101081	Not Available	584	Open in IMG/M
Ga0006761J43178_101294	Not Available	540	Open in IMG/M
Ga0006761J43178_101671	Not Available	518	Open in IMG/M
Ga0006761J43178_101955	All Organisms → cellular organisms → Eukaryota	1560	Open in IMG/M
Ga0006761J43178_102119	Not Available	625	Open in IMG/M
Ga0006761J43178_103384	Not Available	874	Open in IMG/M
Ga0006761J43178_103459	Not Available	570	Open in IMG/M
Ga0006761J43178_103565	Not Available	583	Open in IMG/M
Ga0006761J43178_103756	Not Available	1040	Open in IMG/M
Ga0006761J43178_104220	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis	611	Open in IMG/M
Ga0006761J43178_104295	Not Available	1065	Open in IMG/M
Ga0006761J43178_104532	Not Available	675	Open in IMG/M
Ga0006761J43178_104761	Not Available	649	Open in IMG/M
Ga0006761J43178_104907	Not Available	1224	Open in IMG/M
Ga0006761J43178_105006	Not Available	588	Open in IMG/M
Ga0006761J43178_105213	Not Available	590	Open in IMG/M
Ga0006761J43178_105953	Not Available	501	Open in IMG/M
Ga0006761J43178_106579	Not Available	568	Open in IMG/M
Ga0006761J43178_107868	Not Available	574	Open in IMG/M
Ga0006761J43178_108075	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Mucoromycota → Glomeromycotina → Glomeromycetes → Diversisporales → Diversisporaceae → Diversispora → Diversispora epigaea	643	Open in IMG/M
Ga0006761J43178_109259	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	513	Open in IMG/M
Ga0006761J43178_109432	Not Available	601	Open in IMG/M
Ga0006761J43178_110875	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	992	Open in IMG/M
Ga0006761J43178_120767	Not Available	573	Open in IMG/M
Ga0006761J43178_120904	Not Available	563	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0006761J43178_100035	Ga0006761J43178_1000352	F076133	LSGVRPTGRFDPCADAVTPEGFGCYCADQNAVEIPGGTTPPKGPVRRTNGARKGVTTAGRERT*
Ga0006761J43178_100035	Ga0006761J43178_1000353	F000344	MRPKHPHAAESGVGKHTARESERVQACAAGKERVTNAHPHK
Ga0006761J43178_100106	Ga0006761J43178_1001061	F034588	SPVSPTISIRVAPDPHPPVPADFRSESPRSSVPSGCPHRISGLLRRLALSFVARPFPKSPWFLLAQRRRFRPPRVASKPSSSADPYLLPQVAPASASTAGSMITPWLNRTLHPRLAPWMNLRYQSGTSIPYLTSSALLISIHCPQSADHEL*
Ga0006761J43178_100131	Ga0006761J43178_1001311	F083053	ACRELDGNSGLTGDAGLMETGSTLDAKAEGERPKEIETASSVGQGKLDPLDAKIHPRRKPEDAKFEDSRGFNIDPTVDAEAGQPGEA*
Ga0006761J43178_100278	Ga0006761J43178_1002781	F014631	MVPSDPLDGSLSDRHARPELGIRIGCDVGPLLPAAGLIQLRIVALVLVRSPFR*
Ga0006761J43178_100407	Ga0006761J43178_1004071	F056192	RFEGQRAKREVAELERSAARWYVKTIATRRGVKADRATRYGKFLRLKSGRALSGRDRKVLKGSGSPNTSGELWERKLATGDSRSSPAGRKKPGEAGSGKPNGSIEILRQLRCRPGASTRPRGFAARQTFAAGE*KAASRSKLLPERRADEHQSYDPRLNKTGRGERRAHVTSDPDAKLRPCMPVGERAIHRVTWN
Ga0006761J43178_100429	Ga0006761J43178_1004291	F047514	CDVLNRSMPESSEAVPRGAREGDNMETRDRAGVKAGCNACFDARPGRESLMEKGRQHIDESHALFGCRC*
Ga0006761J43178_100718	Ga0006761J43178_1007181	F025923	EQSQRRGLKNATESTTGIIPGDRGKVGGSWCHPPLQTALAV*
Ga0006761J43178_100939	Ga0006761J43178_1009391	F026580	NHSELNQVARGSFELERIAVTQRVNGCYCASARADDSGGLAHKKRVVSQTKEAERQDKVSIRTGKETRPRQGA*
Ga0006761J43178_100939	Ga0006761J43178_1009392	F003269	VKTRIRIRRRVLTWFVSRWRNHQLKQAEKPHSKFSARKTLDGPATRPKTPLAVENSVGKLAAPQKGAPNA
Ga0006761J43178_100976	Ga0006761J43178_1009761	F100491	RARGTAGGIKTVPSDRQAACSPTGMHGPNVASGTGETALCFPLKVLANRGSLRRCASALHSDRSPLLDATFRSTAPRTGLATDPRNCVNVPGLHLRNDPQIRSGPFGYVLPHPLCLLWLGGRDLHTNPLPNPTRLIARLRTSAPLRELSLPRDQSSQPDFELQSLPLQVARSSFAPRSAATVLWIAQRFGSSFQIRYFLPGSLSLK
Ga0006761J43178_100984	Ga0006761J43178_1009842	F035116	VSAPGSQAGGATISRSELKSLLEIQPHEMLDGPATRPKTPLAVENSVGKPAAAREGVAPNVGVGKEIGELPSP
Ga0006761J43178_101081	Ga0006761J43178_1010811	F027071	PCGGAVSSNAIDNNIELKLTTTPLRKQLPLFVQRRHRPSMPLAPALANLRSKHKRQHGNAPSGQRINSLRNHFTGKRFASSLPLHQLSLTLRIKITGHFNKAKLNSTDTSLLAKLCISSANALASTLAIGNFTLLANHQTAVPEEISFDLLGPFNRRYCYPRSAAISASCPTNTSTLNRRDNSCKYCYLAEVIR
Ga0006761J43178_101294	Ga0006761J43178_1012942	F015217	VTKQDRRRIERVLTFLSLERAQTKPENTVVLSVITGTSVLAFTRVSEGAALALTGLA
Ga0006761J43178_101671	Ga0006761J43178_1016711	F001296	MEVAERRHPLQASEKPLRATGPGQKAVCGEPGSIDPKAEKYGVRGAERRNVRRFCLRCSMPCIPVESQAGNQVTWN
Ga0006761J43178_101955	Ga0006761J43178_1019551	F046210	VIVANIQMKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAGAALKSCNVNS*
Ga0006761J43178_102119	Ga0006761J43178_1021191	F018876	VPSARLSFGLPASFGSFVPTLDAWTKSPLSVECRLSSQAGEVTLRFRSAVLSSTEAVDAFAPLPLPVTSPVELRLASSFVRISFFGLAGDRFPFPLNAVAPAQPATKLLLLPNFASP
Ga0006761J43178_103384	Ga0006761J43178_1033841	F044324	KPEEPQARKLEREDHLGIDGRAGDGDTLWIIAAGHTQHRREKIVNGDDGNDVVEVIRAEPEGAGTHEGIRMFVGGNTTADVADPGLEQSFEVDASQAGVGSNTDRKAAPTARKQRVSTRDHGWPGGGSP*
Ga0006761J43178_103459	Ga0006761J43178_1034591	F076910	PRWLAGSVQTYQVSRAQGGRCRAIAAVPYVPKSSRTAGPTIGSRCVSTGAPPILGGQGDQQLTGSVHTYRVCRGTETLGPSSEITRLRRSRNPARAILLDLANDTDEHVRPGTPCPSGTGPSNLQVPRRRAIASIARSHRSTVATSTTPPPGGWGEAREHTRKDLTSGLAREGQGGVLPNGSAWHRASNP
Ga0006761J43178_103565	Ga0006761J43178_1035651	F029031	VHRTVNLVSGSGPGTLIRWRTNKMECQRGAKGNRAERKGELFAG*
Ga0006761J43178_103565	Ga0006761J43178_1035652	F013305	VKGRFEQPEPVRNSLQTGFRALIRRSTKRVAGSKEDSVRRFLAARLMPCMPAGVELFDESLG
Ga0006761J43178_103756	Ga0006761J43178_1037561	F038031	FSITYDGNVKSLPRTEVARDYNRYTTADGEFEVLISNNLRKPQNGIATVSFKLARYLPDPTPGDFSNPYRNVRNSFGFSYGFDAITRAEVSVDVPRLRATVNTLIDSAFQGRLLGGER*
Ga0006761J43178_104220	Ga0006761J43178_1042202	F066349	MRGKISVDNNETPLLSIDFKEDIIVDVKDTSIFELIETDNKTESKLSFWDIIKDARDFAEELKNKKLTIILNIKGKETLIIGEKAKPSISQILSKSK
Ga0006761J43178_104295	Ga0006761J43178_1042951	F038031	MFTDPFSVTYNSVALSLPRTEVAKDYNRYRTADGEFEIIISNNLRQARDGIANASIKLVRRLPDPTPSNVFDNYRDIRNLFGFTYSFDAQTRAEASVDVPRLRTALLALVDSTLQGRIIAGEK*
Ga0006761J43178_104532	Ga0006761J43178_1045321	F027071	SCPLIKRARKKSCSNPISCYQHSHSGIAALPCGGAVSSNATDYNIELKLTTTLLRKQLPLFVQRRHLPSMPLAPVLANLRSKHKRQQGNAPSGQRFDSLRNHFTGKRFASSLPLHQLLLPLRTKITGHFNKAKLNSTDTSLLAKLCISSANALANILAISNFTLLAKHQTAVPEEISFDLLGPRLTGHIATTGLLPYQSVTRSIQQPRTDELTPVNIAI*
Ga0006761J43178_104761	Ga0006761J43178_1047611	F092500	PGILIGGGILMIIGVILVVISINSLSSLSVSMPTDISTKSLIQSALNFNQTAVKETARTVGISLGLAFSGMLVATILIVNGIIALIAGMVIFFIDRRHKKLNSVHQHAGSPIG*
Ga0006761J43178_104907	Ga0006761J43178_1049071	F047514	DVLNRSMPESTEAVPRGAGEVDNIGTRSRAGVRIGCNAYSDARSGREFQMEKGRQHIR*
Ga0006761J43178_105006	Ga0006761J43178_1050061	F008133	FQVIWFPARSPPACTALSVAIKSAGRFACRLPYERFLRPQDRCFQTRRSLPLSRDRVARNGLSLTRNDCRLSTASIPGSKFQTCYFAPSRIGFRARSANWLCYRLPGLLPGYGRFHASGPLRFYHPVRLAALTVSTPPQEYYLLRDQSVQRRMPPAGPPGEFARFPFAPRHPPFQFGCRIIVPGSLRFRRLAVPQ
Ga0006761J43178_105213	Ga0006761J43178_1052131	F082288	RPNNKTKNMISFLVLSSILGMALASTNAILTAQTANAQFVAKIGGPDTDQVNSRIIGTLLKPGFTNQYNLTMNGKTVPIQYSVLDGSLVGILSDPSRKSLDLAVNPQANGAALEVNVPRHVIDSKNAAGKDAPFIVKVDGNRISGEPSGICVGTCPNILNSFKETYNTNTDRVLTVLVGPESRFIEIIGNHTSA*
Ga0006761J43178_105953	Ga0006761J43178_1059531	F066797	IYQIISSADLGGVATIQRKKSKFDTIFLATLKTEVAKVFMTTEIAHELVDPNPKDYEK*
Ga0006761J43178_106579	Ga0006761J43178_1065791	F076910	RCQARSVQTYQVFRAQAGECRAVATVPYVPKSSRTAGPLMVSRCVSTGAPPVLGGHGDRQLAGSVHTYRVCRGTETLGPSSEVTRLRRSRNPARAILLDLANDTDEHVRPGNPAPANGSPSSNRGRLEEKPITLKARPHRSTVAPITGPRLGGRGSKEAHQKWPDLGVAPRGEGSVLPNVLGAVTEQA
Ga0006761J43178_107868	Ga0006761J43178_1078681	F082288	NKTKNMMSFLVLSSILGIAIVSTNAILTAQTVNAQFVVKLGGPDTDQVNSRIVGTLLKPGFTNKYNLTVNGKTIPIDYSVLDGSLVGILSDPSTKSLDLAVNPQANGAALEVNVPRHVIDSKNAAGKDAPFIVKVDGNRISGEPSGICVGTCPNILNSFKETHSTNTDRVLTVLVGPESRFIEIIGNHTSA
Ga0006761J43178_107977	Ga0006761J43178_1079771	F094971	GTIAKRGEAKLRALIRSAIERSRGGERQANRTSGKAGFL*
Ga0006761J43178_108075	Ga0006761J43178_1080751	F002654	VLNYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIF*
Ga0006761J43178_108230	Ga0006761J43178_1082302	F027763	MALTDPQSITISGTTTPLPRTFAQGNESSYESADRLWKLSLNHNLIKQGRTRHLLRFDHAKIAANPLEAGENVRVNMAVYTVFDVPPPGFYTSAEILAVYTGFKALYSASSDAVITKLIGGES*
Ga0006761J43178_109259	Ga0006761J43178_1092592	F096396	MKSLISLWSRTANELAVRCRTSATRDVKTVTSRTENEGLWFLAVTLASFGKATEKWLNQGFVDPWDAPKFARTKGHLTGRPAFLQGFLDRVFCPDSGALMDEPD
Ga0006761J43178_109432	Ga0006761J43178_1094321	F102579	PACRFPFEGFRPNPVARVMSPPRQLPLMGLLALQSIVCSRPARESGSSHPWAFPFPVSPSVFLRLPSPTTFAVGSSSRKLSLPCRVLPNRARSVAAVRRRRLPGGFVPLRDINQRRHIWSASPTSQTVPSSAFRTPSTVSSATGLVGLFHPTATYRVRSPRVFPPMKPYRLVDGPYPRRWRLPAVRRLPAVRHEPAPRLQ
Ga0006761J43178_110875	Ga0006761J43178_1108751	F005082	FKPAENVKVSMSHYMVFDVPPAGYTAAEALEVYKGFKTLYSSTSDAMIVKLLGGES*
Ga0006761J43178_110875	Ga0006761J43178_1108752	F096396	MKSLTSLWSCMSHELGMRCCTSTTRDITTVTRRTEHEGLSFLAITLADYGKVIQKWLDHGHVVPSDAPAFARKRGHLNGLPVFLQGFLGRVFDPCSGALLNEPDIEAIYALRQLTLGFSKIALP
Ga0006761J43178_120767	Ga0006761J43178_1207671	F043723	LSLITSDDLVRVLSGTFDLSVVPADKHKTIFLMASHCCLNGPVGTNKPTTFPMVVGTVSISGYVGARVSNNSWRSFCQDIAMILTRNYPNVVEASQQHKVAGGLWPIAKSISEVRVNK*
Ga0006761J43178_120904	Ga0006761J43178_1209041	F043723	FLSLIHSDDLVRVLSGTFDISQVPVEKHRGIFLMASHCCLNGPVGTNKPTTFPLLPGTISISGYIGNRVSNNSWRSFCQDIAGVLLRSFPNIVAESQQQKVAGGLWPIAKSISEVRKVGFITPYFYICVLVIWTRCYQKNSW*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002865: Avena fatua rhizosphere microbial communities - H1_Bulk_Litter_4 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences