3300002860: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300002860
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0055561 | Ga0004694
• Sample Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - Graham LP Incubations RNA 1 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 743121
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → polar → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Barrow Environmental Observatory site, Alaska, USA
• Coordinates
  • Lat. (^o): 71.2999
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000817	Metagenome / Metatranscriptome	879	Y
F007695	Metagenome / Metatranscriptome	346	Y
F013836	Metagenome / Metatranscriptome	268	Y
F046210	Metagenome / Metatranscriptome	151	N
F105212	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0004694J43177_10028	Not Available	684
Ga0004694J43177_10031	Not Available	605
Ga0004694J43177_10069	Not Available	837
Ga0004694J43177_10149	Not Available	791
Ga0004694J43177_10239	Not Available	548
Ga0004694J43177_10430	All Organisms → cellular organisms → Eukaryota	1568

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0004694J43177_10028	Ga0004694J43177_100281	F105212	SHKGSPKNGGSGQKFLTEFEAKSYGSQDLHHRWVGVWANREQSNVA*
Ga0004694J43177_10031	Ga0004694J43177_100311	F105212	VSHKGSPKNGGSGQKFLIELEAKSNGSQDLHHRRVGVQDHKEQSDVIRATKKC*
Ga0004694J43177_10069	Ga0004694J43177_100691	F000817	EQKQPAAFNRLKPEVSRIIPGDWGKAGPGWLAKPLLKRIERFGSGGRIHQFL*
Ga0004694J43177_10149	Ga0004694J43177_101492	F007695	VKRRDPWHGANALSKAAADPVLMVKTRNKNRRRVLTWFASWWRNHRPKQAEKPHSKSSGRKALDGPATRPKTPLAVENGVGKLTAPERGVPNVGMGKRAWRTPIPH
Ga0004694J43177_10239	Ga0004694J43177_102391	F013836	FQVIRFAALPTTGMPGTEHRNRERCTLRLSAPQQPLSPATGSMLPGASQPFFSPHRGRSLVTAFPSPTTTPACAKPIPGSKVLTCYFAPCYLALLPVRPFCSTTVAGSPRLRPLHRFWPVAKSPNSPADGASCLHSPPGLLPPSGSKRSAGFAACQARLPNPPDFLSLPAARFYH*
Ga0004694J43177_10430	Ga0004694J43177_104302	F046210	MKNLKIEAEKGFRRTLFEPELVDPNLEINFVNDAGAALKSCNVNS*